RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 MAP7D3Q8IWC1 876 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 ALLCQ8N6M5 410 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 CCDC77Q9BR77 488 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 CENPHQ9H3R5 247 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 SEMA4AQ9H3S1 761 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 HMGXB4Q9UGU5 601 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 PTPRSQ13332 1948 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 TCEA3O75764 348 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 ACADSBP45954 432 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 TFDP2Q14188 446 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 BOLA3Q53S33 107 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 FAM102AQ5T9C2 384 aaPredicted RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 TMCO2Q7Z6W1 182 aaPredicted RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 SPATS2Q86XZ4 545 aaKnown RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 SH2D3CQ8N5H7 860 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 OR2W6PQ8NHA6 318 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 JOSD2Q8TAC2 188 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 SLC35B2Q8TB61 432 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 RAPGEF5Q92565 580 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 CENPTQ96BT3 561 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 SERPINB12Q96P63 405 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 TBCBQ99426 244 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 ADAM2Q99965 735 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 EIF2AQ9BY44 585 aaKnown RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 PCDH9Q9HC56 1237 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 NOVA2Q9UNW9 492 aaKnown RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 C3orf70A6NLC5 250 aaPredicted RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 C2CD4BA6NLJ0 364 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 ZNF487B1APH4 448 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 RGS16O15492 202 aaPredicted RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 TTC4O95801 387 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 TRUB2O95900 331 aaKnown RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 TAF6P49848 677 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 DSC3Q14574 896 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 MORF4L2Q15014 288 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 PDK2Q15119 407 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 OASLQ15646 514 aaKnown RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 ATP13A4Q4VNC1 1196 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 OR6B2Q6IFH4 312 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 HIBCHQ6NVY1 386 aaPredicted RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLN3-263ENST00000637871 LIMS2Q7Z4I7 341 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 TEKT4Q8WW24 435 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 ZBTB9Q96C00 473 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 ZMAT2Q96NC0 199 aaKnown RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 TTC25Q96NG3 672 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 GDF15Q99988 308 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 FAM107BQ9H098 131 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 CHST12Q9NRB3 414 aa19.22■□□□□ 0.67
CLN3-263ENST00000637871 CXXC1Q9P0U4 656 aaPredicted RBP19.22■□□□□ 0.67
CLN3-263ENST00000637871 BCCIPQ9P287 314 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLN3-263ENST00000637871 LAMA3Q16787 3333 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 SMIM28A0A1B0GU29 152 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.21■□□□□ 0.67
CLN3-263ENST00000637871 ZBBXA8MT70 800 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 PI4K2BG5E9Z4 385 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 DNALI1O14645 258 aaPredicted RBP19.21■□□□□ 0.67
CLN3-263ENST00000637871 RASGRF2O14827 1237 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 DEFB103AP81534 67 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 GOLGA7BQ2TAP0 167 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 DAB2IPQ5VWQ8 1189 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 IZUMO3Q5VZ72 239 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 KAZNQ674X7 775 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 TWF2Q6IBS0 349 aaKnown RBP19.21■□□□□ 0.67
CLN3-263ENST00000637871 TAOK1Q7L7X3 1001 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 ZCCHC9Q8N567 271 aaKnown RBP19.21■□□□□ 0.67
CLN3-263ENST00000637871 KCTD6Q8NC69 237 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 SLC35F5Q8WV83 523 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 TNIP3Q96KP6 325 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 EPN3Q9H201 632 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 PPCSQ9HAB8 311 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 USP18Q9UMW8 372 aa19.21■□□□□ 0.67
CLN3-263ENST00000637871 KPNA7A9QM74 516 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 TP73O15350 636 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 ENDOD1O94919 500 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 FGBP02675 491 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 PFKMP08237 780 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 ABHD2P08910 425 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 KRT10P13645 584 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 MIPP30301 263 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 LRPAP1P30533 357 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 RPL34P49207 117 aaKnown RBP19.2■□□□□ 0.66
CLN3-263ENST00000637871 SLC6A3Q01959 620 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 UBXN11Q5T124 520 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 PSRC1Q6PGN9 363 aaPredicted RBP19.2■□□□□ 0.66
CLN3-263ENST00000637871 TOP6BLQ8N6T0 577 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 ANKRD52Q8NB46 1076 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 OR6B3Q8NGW1 331 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 UBA3Q8TBC4 463 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 APBB2Q92870 758 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 HSFY1Q96LI6 401 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 UBE2OQ9C0C9 1292 aaKnown RBP19.2■□□□□ 0.66
CLN3-263ENST00000637871 SNX25Q9H3E2 840 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 CDC42EP4Q9H3Q1 356 aaKnown RBP19.2■□□□□ 0.66
CLN3-263ENST00000637871 PRDM16Q9HAZ2 1276 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 SLC38A7Q9NVC3 462 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 DNPEPQ9ULA0 475 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 TPX2Q9ULW0 747 aaKnown RBP19.2■□□□□ 0.66
CLN3-263ENST00000637871 SHOC2Q9UQ13 582 aa19.2■□□□□ 0.66
CLN3-263ENST00000637871 TCF4P15884 667 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms