RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TEX51A0A1B0GUA7 166 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 PFKLP17858 780 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 ACOT2P49753 483 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 NCKAP1LP55160 1127 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 GUCY1B3Q02153 619 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 GAD2Q05329 585 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 TRIM29Q14134 588 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 PTPRNQ16849 979 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 KIAA1324Q6UXG2 1013 aaKnown RBP15.56■□□□□ 0.08
CLN3-249ENST00000636685 OSTM1Q86WC4 334 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 C4orf32Q8N8J7 132 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 KIAA1958Q8N8K9 716 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 TERB1Q8NA31 727 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 NXPE2Q96DL1 559 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 DEC1Q9P2X7 70 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 KCNG1Q9UIX4 513 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 DNMT3LQ9UJW3 386 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 C2CD2Q9Y426 696 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 PIEZO2Q9H5I5 2752 aa15.56■□□□□ 0.08
CLN3-249ENST00000636685 NPHP3-ACAD11A0A0J9YXS1 232 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 CAPN8A6NHC0 703 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 RRP8O43159 456 aaKnown RBP15.55■□□□□ 0.08
CLN3-249ENST00000636685 TNFSF14O43557 240 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 REC8O95072 547 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 NCAM1P13591 858 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 CD6P30203 668 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 CLDN6P56747 220 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 ORC2Q13416 577 aaPredicted RBP15.55■□□□□ 0.08
CLN3-249ENST00000636685 CFAP221Q4G0U5 840 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 TTC38Q5R3I4 469 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 BTBD8Q5XKL5 378 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 SLC39A4Q6P5W5 647 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 IL27RAQ6UWB1 636 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 CHPFQ8IZ52 775 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 TOE1Q96GM8 510 aaKnown RBP15.55■□□□□ 0.08
CLN3-249ENST00000636685 MRGPRX1Q96LB2 322 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 GPR174Q9BXC1 333 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 ASB7Q9H672 318 aa15.55■□□□□ 0.08
CLN3-249ENST00000636685 A0A1B0GVT2 93 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 ZNF840PA6NDX5 716 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 BCAT2O15382 392 aaPredicted RBP15.54■□□□□ 0.08
CLN3-249ENST00000636685 JAK2O60674 1132 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 OLFM2O95897 454 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 ABL1P00519 1130 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 PIGRP01833 764 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 MYL7Q01449 175 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 KCNC4Q03721 635 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 DCAF12L1Q5VU92 463 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 SDE2Q6IQ49 451 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 IGSF22Q8N9C0 903 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 ZNF560Q96MR9 790 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 GMIPQ9P107 970 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 STARD13Q9Y3M8 1113 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 AK5Q9Y6K8 562 aa15.54■□□□□ 0.08
CLN3-249ENST00000636685 NUMA1Q14980 2115 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 MYH10P35580 1976 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 COL5A1P20908 1838 aaPredicted RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 HOXC11O43248 304 aaPredicted RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 HUS1O60921 280 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 ATP2C2O75185 946 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 OAS1P00973 400 aaKnown RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 MBL2P11226 248 aaPredicted RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 MAGEA11P43364 429 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 SUZ12Q15022 739 aaKnown RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 ZRSR1Q15695 479 aaKnown RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 TAF1BQ53T94 588 aaPredicted RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 KRT79Q5XKE5 535 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 SCARA3Q6AZY7 606 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 DENND5BQ6ZUT9 1274 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 TMPRSS12Q86WS5 348 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 FAM181AQ8N9Y4 354 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 NSUN7Q8NE18 718 aaKnown RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 FUBP3Q96I24 572 aaKnown RBP eCLIP15.53■□□□□ 0.08
CLN3-249ENST00000636685 SPATA17Q96L03 361 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 GABRG3Q99928 467 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 MMTAG2Q9BU76 263 aaKnown RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 WSB2Q9NYS7 404 aaPredicted RBP15.53■□□□□ 0.08
CLN3-249ENST00000636685 TBC1D14Q9P2M4 693 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 NFE2L3Q9Y4A8 694 aa15.53■□□□□ 0.08
CLN3-249ENST00000636685 TISP43B9A030 160 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 ANKRD63C9JTQ0 380 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 H0YCG3 227 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 BDNFP23560 247 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 POLR2BP30876 1174 aaKnown RBP15.52■□□□□ 0.08
CLN3-249ENST00000636685 CXADRP78310 365 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 ANO4Q32M45 955 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 PREPLQ4J6C6 727 aaPredicted RBP15.52■□□□□ 0.08
CLN3-249ENST00000636685 C6orf118Q5T5N4 469 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 NUDT18Q6ZVK8 323 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 TMEM25Q86YD3 366 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 SEMA4CQ9C0C4 833 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 EIF2B4Q9UI10 523 aaKnown RBP15.52■□□□□ 0.08
CLN3-249ENST00000636685 SLCO1B1Q9Y6L6 691 aa15.52■□□□□ 0.08
CLN3-249ENST00000636685 TP53BP1Q12888 1972 aaPredicted RBP15.51■□□□□ 0.07
CLN3-249ENST00000636685 E2F8A0AVK6 867 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 KCNJ18B7U540 433 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 WASH3PC4AMC7 463 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 ERVH48-1M5A8F1 160 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 KCNK3O14649 394 aa15.51■□□□□ 0.07
CLN3-249ENST00000636685 JUPP14923 745 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms