RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MOGSQ13724 837 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 NRF1Q16656 503 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 DUOXA2Q1HG44 320 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 RALGPS1Q5JS13 557 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 PDPK2PQ6A1A2 396 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 TRIM67Q6ZTA4 783 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 ACAD11Q709F0 780 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 LARGE2Q8N3Y3 721 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 ZSCAN18Q8TBC5 510 aaPredicted RBP11.45□□□□□ -0.58
CLN3-244ENST00000636147 LENG9Q96B70 501 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 MRPL46Q9H2W6 279 aaKnown RBP11.45□□□□□ -0.58
CLN3-244ENST00000636147 SLC7A8Q9UHI5 535 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 AURKCQ9UQB9 309 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 EDIL3O43854 480 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 EXTL3O43909 919 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 CFHP08603 1231 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 CASP2P42575 452 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 HDAC4P56524 1084 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 C16orf72Q14CZ0 275 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 N4BP2L1Q5TBK1 243 aaPredicted RBP11.45□□□□□ -0.58
CLN3-244ENST00000636147 TMC2Q8TDI7 906 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 PHF12Q96QT6 1004 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 HAUS8Q9BT25 410 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 MTMR12Q9C0I1 747 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 NDUFA13Q9P0J0 144 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 PAK5Q9P286 719 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 KCPQ6ZWJ8 1503 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 AKAP11Q9UKA4 1901 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 A0A0B4J269 797 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 CYP3A4P08684 503 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 VCLP18206 1134 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 SDC4P31431 198 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 ABCG1P45844 678 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 CDK7P50613 346 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 CHN2P52757 468 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 NCKAP1LP55160 1127 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 MYL6P60660 151 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 RPS6P62753 249 aaKnown RBP11.45□□□□□ -0.58
CLN3-244ENST00000636147 CRADDP78560 199 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 IFRD2Q12894 506 aaPredicted RBP11.45□□□□□ -0.58
CLN3-244ENST00000636147 DPYSL3Q14195 570 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 PRPSAP1Q14558 356 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 TRIM74Q86UV6 250 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 TRIM73Q86UV7 250 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 HPS6Q86YV9 775 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 CERS5Q8N5B7 392 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 PLEKHO2Q8TD55 490 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 SPATA16Q9BXB7 569 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 PLA2G4CQ9UP65 541 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 APOL1O14791 398 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 SPAG6O75602 509 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 TM7SF2O76062 418 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 IL1R1P14778 569 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 ARL4AP40617 200 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 FOLH1Q04609 750 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 CES3Q6UWW8 571 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 DAW1Q8N136 415 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 KCTD17Q8N5Z5 321 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 RNF34Q969K3 372 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 FAM163AQ96GL9 167 aaPredicted RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 SERAC1Q96JX3 654 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 CEP41Q9BYV8 373 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 UBE2OQ9C0C9 1292 aaKnown RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 BTBD7Q9P203 1132 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 RABGEF1Q9UJ41 708 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 DGAT1O75907 488 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 APOEP02649 317 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 P4HA1P13674 534 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 SFNP31947 248 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 SLC1A6P48664 564 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 AQP4P55087 323 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 NOMO3P69849 1222 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 GABPAQ06546 454 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 C1QBPQ07021 282 aaKnown RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 MMRN1Q13201 1228 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 BAATQ14032 418 aaPredicted RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 SLC15A2Q16348 729 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 PLEKHG4Q58EX7 1191 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 KLC3Q6P597 504 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 RHBDF2Q6PJF5 856 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 PTAR1Q7Z6K3 402 aaPredicted RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 RNF135Q8IUD6 432 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 STKLD1Q8NE28 680 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 MMP19Q99542 508 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 P2RX7Q99572 595 aaKnown RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 RSAD1Q9HA92 442 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 ACSS2Q9NR19 701 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 CISHQ9NSE2 258 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 ZBBXA8MT70 800 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 OR6B1O95007 311 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 ITGB5P18084 799 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 STIP1P31948 543 aaKnown RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 RGS2P41220 211 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 PRKCEQ02156 737 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 TAP1Q03518 808 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 POU5F1BQ06416 359 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 SIX1Q15475 284 aaPredicted RBP11.44□□□□□ -0.58
CLN3-244ENST00000636147 EFHC2Q5JST6 749 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 TXNRD3NBQ6F5E7 133 aa11.44□□□□□ -0.58
CLN3-244ENST00000636147 LRRC8EQ6NSJ5 796 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms