RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	ANKRD7	Q92527	254 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CASP10	Q92851	521 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	DDX27	Q96GQ7	796 aa	Known RBP	10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PIWIL1	Q96J94	861 aa	Known RBP	10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	NECTIN4	Q96NY8	510 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	RTP3	Q9BQQ7	232 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	S1PR5	Q9H228	398 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CWH43	Q9H720	699 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PARVA	Q9NVD7	372 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TECTA	O75443	2155 aa		10.01	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TMEM191C	A6NGB0	347 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ACAT1	P24752	427 aa	Known RBP	10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CTNNA1	P35221	906 aa	Known RBP	10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PAFAH1B1	P43034	410 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	BRCC3	P46736	316 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TUBB4B	P68371	445 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	KCNC3	Q14003	757 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CES5A	Q6NT32	575 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	AADACL2	Q6P093	401 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PMF1	Q6P1K2	205 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ABI1	Q8IZP0	508 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	FUK	Q8N0W3	1084 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	RASGEF1C	Q8N431	466 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	B3GALNT2	Q8NCR0	500 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	C3orf20	Q8ND61	904 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	UBXN4	Q92575	508 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	GOLGA1	Q92805	767 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TNIP3	Q96KP6	325 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	UROC1	Q96N76	676 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ZNF558	Q96NG5	402 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TBC1D13	Q9NVG8	400 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SPG21	Q9NZD8	308 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	RNF14	Q9UBS8	474 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TMEM59L	Q9UK28	342 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	STRIP2	Q9ULQ0	834 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TIMM13	Q9Y5L4	95 aa	Predicted RBP	10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PLXNA4	Q9HCM2	1894 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	MIF4GD	A9UHW6	222 aa	Known RBP	10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	MYO1F	O00160	1098 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TCF4	P15884	667 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PAX3	P23760	479 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	AVPR2	P30518	371 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PSMC1	P62191	440 aa	Known RBP	10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ITIH3	Q06033	890 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CFAP221	Q4G0U5	840 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TEX35	Q5T0J7	233 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TRNP1	Q6NT89	227 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	KCNT2	Q6UVM3	1135 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	DSTYK	Q6XUX3	929 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TMC7	Q7Z402	723 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	COLGALT2	Q8IYK4	626 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	UBALD2	Q8IYN6	164 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TMEM86A	Q8N2M4	240 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	LRRC43	Q8N309	656 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SPATA4	Q8NEY3	305 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	JOSD2	Q8TAC2	188 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	FEZF2	Q8TBJ5	459 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	URGCP	Q8TCY9	931 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	HASPIN	Q8TF76	798 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	MCRS1	Q96EZ8	462 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CASD1	Q96PB1	797 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	MCEE	Q96PE7	176 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SELENOO	Q9BVL4	669 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SYNC	Q9H7C4	482 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ANKZF1	Q9H8Y5	726 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CRTAC1	Q9NQ79	661 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ENTPD7	Q9NQZ7	604 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TMEM30A	Q9NV96	361 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	HCST	Q9UBK5	93 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	HESX1	Q9UBX0	185 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587	DNAJB4	Q9UDY4	337 aa		10	□□□□□ -0.81
PDLIM5-223	ENST00000627587		E5RJQ4	531 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587		M0QZQ0	153 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PIK3R2	O00459	728 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SPOP	O43791	374 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	B3GAT3	O94766	335 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PROSC	O94903	275 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CYP11A1	P05108	521 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CTNNA2	P26232	953 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	RFC1	P35251	1148 aa	Predicted RBP	9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	RPL34	P49207	117 aa	Known RBP	9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	CDR1	P51861	262 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TAS2R40	P59535	323 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	RNASE9	P60153	205 aa	Known RBP	9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PDE4C	Q08493	712 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	C2orf54	Q08AI8	447 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SMC1A	Q14683	1233 aa	Known RBP	9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	NOMO2	Q5JPE7	1267 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	IER5L	Q5T953	404 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	DNAJC24	Q6P3W2	148 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ARFGAP1	Q8N6T3	406 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	UBL4B	Q8N7F7	174 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SLC2A14	Q8TDB8	520 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	ACTRT1	Q8TDG2	376 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	IPO4	Q8TEX9	1081 aa	Known RBP	9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	C18orf8	Q96DM3	657 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	PBK	Q96KB5	322 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	TCF25	Q9BQ70	676 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	SLC4A5	Q9BY07	1137 aa		9.99	□□□□□ -0.81
PDLIM5-223	ENST00000627587	MRPL9	Q9BYD2	267 aa	Known RBP	9.99	□□□□□ -0.81

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