RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 KIAA0754O94854 1291 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 TMEM63AO94886 807 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 C6orf222P0C671 652 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 GCAP28676 217 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 KYAT1Q16773 422 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 FBXO47Q5MNV8 452 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 TWF2Q6IBS0 349 aaKnown RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 SLC35F5Q8WV83 523 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 KBTBD7Q8WVZ9 684 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 RASSF4Q9H2L5 321 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 PCDH9Q9HC56 1237 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 HESX1Q9UBX0 185 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 MYO18AQ92614 2054 aaKnown RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 SMIM35A0A1B0GVV1 85 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 KPNA7A9QM74 516 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 RASA4BC9J798 803 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 F5H423 210 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 H7C0C1 242 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 RASA4O43374 803 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 IL4RP24394 825 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 SDC4P31431 198 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 ATP5OP48047 213 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 ZKSCAN8Q15776 578 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 BBS9Q3SYG4 887 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 GKAP1Q5VSY0 366 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 ALKAL1Q6UXT8 129 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 C4orf33Q8N1A6 199 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 P3H4Q92791 437 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 MBLAC1A4D2B0 266 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 TCP11X1B4DZS4 312 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 APOC4-APOC2K7ER74 178 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 MCF2LO15068 1137 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 APOC2P02655 101 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 RARBP10826 455 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 PTPN7P35236 360 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 SLC6A3Q01959 620 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 MORF4L2Q15014 288 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 HIF1AQ16665 826 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 PKDCCQ504Y2 493 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 WDR83Q9BRX9 315 aaKnown RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 STMN4Q9H169 189 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 PLEKHA5Q9HAU0 1116 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 TMPRSS4Q9NRS4 437 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 XPO7Q9UIA9 1087 aaKnown RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 IPPQ9Y573 584 aa11.1□□□□□ -0.63
CUX1-221ENST00000622516 TIMM13Q9Y5L4 95 aaPredicted RBP11.1□□□□□ -0.63
CUX1-221ENST00000622516 ZSWIM8A7E2V4 1837 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CDH16O75309 829 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 PGK1P00558 417 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 HDAC4P56524 1084 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 GPX6P59796 221 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 PKN2Q16513 984 aaKnown RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 UBXN11Q5T124 520 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CXCL17Q6UXB2 119 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CACNA2D3Q8IZS8 1091 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CCHCR1Q8TD31 782 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 LPPQ93052 612 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 SNRNP25Q9BV90 132 aaKnown RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 OSBPL7Q9BZF2 842 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 AP5M1Q9H0R1 490 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 FGFR1OP2Q9NVK5 253 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 FARP1Q9Y4F1 1045 aaPredicted RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 KRT15P19012 456 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CTGFP29279 349 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 TKTP29401 623 aaKnown RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 PCK1P35558 622 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 FKBP1BP68106 108 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 ADAM17P78536 824 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 TAZQ16635 292 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CENPUQ71F23 418 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CTU1Q7Z7A3 348 aaKnown RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 NT5DC4Q86YG4 428 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 IGDCC3Q8IVU1 814 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 PYROXD2Q8N2H3 581 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 GPATCH11Q8N954 259 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 SMG8Q8ND04 991 aaKnown RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 PCDH19Q8TAB3 1148 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 PYROXD1Q8WU10 500 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 THOC1Q96FV9 657 aaKnown RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 CCDC77Q9BR77 488 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 RSAD1Q9HA92 442 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CNTN3Q9P232 1028 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 UBQLN1Q9UMX0 589 aaKnown RBP11.09□□□□□ -0.63
CUX1-221ENST00000622516 MFHAS1Q9Y4C4 1052 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 CAPN7Q9Y6W3 813 aa11.09□□□□□ -0.63
CUX1-221ENST00000622516 A0A087WUV0 522 aaPredicted RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 A0A1W2PPM1 405 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 PIRO00625 290 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 KCNN4O15554 427 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 BEST1O76090 585 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 MAGEA9P43362 315 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 NDUFV1P49821 464 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 GSCP56915 257 aaPredicted RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 PITX1P78337 314 aaPredicted RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 FSCN1Q16658 493 aaKnown RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 GNASQ5JWF2 1037 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 FBXW10Q5XX13 1052 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 C3orf62Q6ZUJ4 267 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 CROCCP2Q86T23 111 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms