RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 FNIP1Q8TF40 1166 aa20.4■□□□□ 0.86
PDLIM3-212ENST00000620787 PLLPQ9Y342 182 aa20.4■□□□□ 0.86
PDLIM3-212ENST00000620787 COL11A1P12107 1806 aaPredicted RBP20.4■□□□□ 0.86
PDLIM3-212ENST00000620787 GOLGB1Q14789 3259 aaKnown RBP20.4■□□□□ 0.86
PDLIM3-212ENST00000620787 TNFSF9P41273 254 aa20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 MRPS5P82675 430 aaKnown RBP20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 TEX44Q53QW1 395 aa20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 ARID3BQ8IVW6 561 aaPredicted RBP20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 KCTD6Q8NC69 237 aa20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 GMLQ99445 158 aa20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 MTMR12Q9C0I1 747 aa20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 ZNF395Q9H8N7 513 aaPredicted RBP20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 TAGLN3Q9UI15 199 aa20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 RIPK3Q9Y572 518 aa20.39■□□□□ 0.86
PDLIM3-212ENST00000620787 LYNP07948 512 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 POLE2P56282 527 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 ACTR3P61158 418 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 MAP3K10Q02779 954 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 BRSK2Q8IWQ3 736 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 EMC1Q8N766 993 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 SPATA18Q8TC71 538 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 CFAP36Q96G28 342 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 TRIM4Q9C037 500 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 FAM192AQ9GZU8 254 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 PCSK1NQ9UHG2 260 aa20.39■□□□□ 0.85
PDLIM3-212ENST00000620787 DCAF8L1A6NGE4 600 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CXorf49A8MYA2 514 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 ARL2P36404 184 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 TMPRSS15P98073 1019 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 ANGEL2Q5VTE6 544 aaKnown RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 FKBP1CQ5VVH2 108 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 NPNTQ6UXI9 565 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 IZUMO2Q6UXV1 221 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 WDR49Q8IV35 697 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 TRIM42Q8IWZ5 723 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 PPM1NQ8N819 430 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CMASQ8NFW8 434 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 E2F7Q96AV8 911 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 ACAP3Q96P50 834 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CCDC106Q9BWC9 280 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 WWP1Q9H0M0 922 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 RNF146Q9NTX7 359 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 SIRPGQ9P1W8 387 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 SLC7A8Q9UHI5 535 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CTDP1Q9Y5B0 961 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 SPECC1L-ADORA2AF8WAN1 911 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CIB2O75838 187 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 SNRPAP09012 282 aaKnown RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CHRNA5P30532 468 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CCNFP41002 786 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 YWHAZP63104 245 aaKnown RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 ROR1Q01973 937 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 DSG1Q02413 1049 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 KDSRQ06136 332 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 FAM182AQ5T1J6 154 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 SCARA5Q6ZMJ2 495 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 WNK4Q96J92 1243 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 ECSITQ9BQ95 431 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 THTPAQ9BU02 230 aa20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 ASCC2Q9H1I8 757 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 DHX33Q9H6R0 707 aaKnown RBP20.38■□□□□ 0.85
PDLIM3-212ENST00000620787 CCDC195A0A1B0GUA6 201 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 TTLL13PA6NNM8 815 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 ERFP50548 548 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 AP3M2P53677 418 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 PSMC1P62191 440 aaKnown RBP20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 CDK18Q07002 472 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 CBLBQ13191 982 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 CHI3L2Q15782 390 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 ATG16L1Q676U5 607 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 FAM83AQ86UY5 434 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 CTAGE3PQ8IX95 158 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 HSPH1Q92598 858 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 DDX50Q9BQ39 737 aaKnown RBP20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 DNAJB4Q9UDY4 337 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 ZNF180Q9UJW8 692 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 CHADO15335 359 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 FAM189A1O60320 539 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 RFPL1O75677 317 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 RAD17O75943 681 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 RTN3O95197 1032 aaPredicted RBP20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 SUPT20HL2P0C7V6 817 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 CRABP2P29373 138 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 MIPP30301 263 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 POLR2BP30876 1174 aaKnown RBP20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 AQP5P55064 265 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 YWHAEP62258 255 aaKnown RBP20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 NOMO1Q15155 1222 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 NBPF20Q3BBV1 942 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 SUPT20HL1Q3ZLR7 823 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 DNAL1Q4LDG9 190 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 DARS2Q6PI48 645 aaKnown RBP20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 GBP5Q96PP8 586 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 PLAC1Q9HBJ0 212 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 GPAMQ9HCL2 828 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 NDE1Q9NXR1 346 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 MGAMO43451 1857 aa20.37■□□□□ 0.85
PDLIM3-212ENST00000620787 CYB561D2O14569 222 aa20.36■□□□□ 0.85
PDLIM3-212ENST00000620787 KRT37O76014 449 aa20.36■□□□□ 0.85
PDLIM3-212ENST00000620787 STIP1P31948 543 aaKnown RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms