RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ROR1Q01973 937 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 LCLAT1Q6UWP7 414 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 SLC24A5Q71RS6 500 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 MIB1Q86YT6 1006 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 IFNLR1Q8IU57 520 aaPredicted RBP16.43■□□□□ 0.22
CPSF1-213ENST00000620219 DICER1Q9UPY3 1922 aaKnown RBP16.43■□□□□ 0.22
CPSF1-213ENST00000620219 HSD17B3P37058 310 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 XYLT1Q86Y38 959 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 OTUD6BQ8N6M0 293 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 B3GALT6Q96L58 329 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 MIOSQ9NXC5 875 aa16.43■□□□□ 0.22
CPSF1-213ENST00000620219 SELPP16109 830 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 NPR3P17342 541 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 YWHAZP63104 245 aaKnown RBP16.42■□□□□ 0.22
CPSF1-213ENST00000620219 ENPEPQ07075 957 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 TUSC3Q13454 348 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 KCNK16Q96T55 309 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 RHOBTB2Q9BYZ6 727 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 DNPEPQ9ULA0 475 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 R3HDM2Q9Y2K5 976 aaKnown RBP16.42■□□□□ 0.22
CPSF1-213ENST00000620219 MYO7AQ13402 2215 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 TIGD5Q53EQ6 642 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 C4orf50Q6ZRC1 276 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 SNF8Q96H20 258 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 UBN1Q9NPG3 1134 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 SCN4AP35499 1836 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 HAS3O00219 553 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 ZSCAN5DPP0CG00 497 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 NDUFV1P49821 464 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 ITGA8P53708 1063 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 PMS2P54278 862 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 CCDC38Q502W7 563 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 TXNRD3NBQ6F5E7 133 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 TTC30AQ86WT1 665 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 USP6NLQ92738 828 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 PWWP2AQ96N64 755 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 COLEC11Q9BWP8 271 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 GDF3Q9NR23 364 aa16.42■□□□□ 0.22
CPSF1-213ENST00000620219 GPD2P43304 727 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 RPL21P46778 160 aaKnown RBP16.41■□□□□ 0.22
CPSF1-213ENST00000620219 BOLA3Q53S33 107 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 ZC3H12AQ5D1E8 599 aaKnown RBP16.41■□□□□ 0.22
CPSF1-213ENST00000620219 PDZD4Q76G19 769 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-213ENST00000620219 CTU1Q7Z7A3 348 aaKnown RBP16.41■□□□□ 0.22
CPSF1-213ENST00000620219 ANKMY2Q8IV38 441 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 BBOF1Q8ND07 529 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 CNTN3Q9P232 1028 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 TTC27Q6P3X3 843 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 DCP1BQ8IZD4 617 aaKnown RBP16.41■□□□□ 0.22
CPSF1-213ENST00000620219 STKLD1Q8NE28 680 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 MYLPFQ96A32 169 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 PCDH10Q9P2E7 1040 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 AP4E1Q9UPM8 1137 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 ARVCFO00192 962 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 TLE2Q04725 743 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 AGMOQ6ZNB7 445 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 TMEM169Q96HH4 297 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 TSPYL1Q9H0U9 437 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 TPI1P60174 286 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 ALS2CLQ60I27 953 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 BCO2Q9BYV7 579 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 ZMYND15Q9H091 742 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 LHX5Q9H2C1 402 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 LCMT1Q9UIC8 334 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 PCDHGC3Q9UN70 934 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 SLC27A5Q9Y2P5 690 aa16.41■□□□□ 0.22
CPSF1-213ENST00000620219 ANKRD65E5RJM6 399 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 ADAMTS4O75173 837 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 GRIK3Q13003 919 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 HEATR6Q6AI08 1181 aaKnown RBP16.4■□□□□ 0.22
CPSF1-213ENST00000620219 AGAP3Q96P47 875 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 GOLGA8KD6RF30 607 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 FAM189A1O60320 539 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 ETS1P14921 441 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 GBP1P32455 592 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 ATXN1P54253 815 aaKnown RBP16.4■□□□□ 0.22
CPSF1-213ENST00000620219 NPNTQ6UXI9 565 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 ZBED8Q8IZ13 594 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 ZNF512Q96ME7 567 aaPredicted RBP16.4■□□□□ 0.22
CPSF1-213ENST00000620219 CAPS2Q9BXY5 557 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 CEP41Q9BYV8 373 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 RAB6BQ9NRW1 208 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 TXNDC16Q9P2K2 825 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 LRCH4O75427 683 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 CCL5P13501 91 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 KYNUQ16719 465 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 ARFGAP2Q8N6H7 521 aa16.4■□□□□ 0.22
CPSF1-213ENST00000620219 PIWIL1Q96J94 861 aaKnown RBP16.4■□□□□ 0.22
CPSF1-213ENST00000620219 KLHL8Q9P2G9 620 aaPredicted RBP16.4■□□□□ 0.22
CPSF1-213ENST00000620219 A0A0U1RQF3 1178 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 APRTP07741 180 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 GATMP50440 423 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 PDIA2Q13087 525 aaKnown RBP16.39■□□□□ 0.21
CPSF1-213ENST00000620219 SLMAPQ14BN4 828 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 UBXN11Q5T124 520 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 ECHDC2Q86YB7 292 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 PDIK1LQ8N165 341 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 FAM169AQ9Y6X4 670 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 RLFQ13129 1914 aa16.39■□□□□ 0.21
CPSF1-213ENST00000620219 ZNFX1Q9P2E3 1918 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms