RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CASP1P29466 404 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 GOLGA8FQ08AF8 430 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 GOLGA8DPQ0D2H9 430 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 STK4Q13043 487 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 DHCR24Q15392 516 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 NFIL3Q16649 462 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 ZACNQ401N2 412 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 PLK5Q496M5 336 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 KMT5BQ4FZB7 885 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 BTBD8Q5XKL5 378 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 INTS8Q75QN2 995 aaKnown RBP12.64□□□□□ -0.39
UPF3B-204ENST00000619445 TRMT11Q7Z4G4 463 aaKnown RBP12.64□□□□□ -0.39
UPF3B-204ENST00000619445 FILIP1Q7Z7B0 1213 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 FAM35AQ86V20 835 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 KBTBD6Q86V97 674 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 CRYBG2Q8N1P7 616 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 CCDC150Q8NCX0 1101 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 USP33Q8TEY7 942 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 SPATA32Q96LK8 384 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 HHIPQ96QV1 700 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 PNKPQ96T60 521 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 RNF38Q9H0F5 515 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 ARRDC1-AS1Q9H2J1 176 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 KCTD10Q9H3F6 313 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 DPEP3Q9H4B8 488 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 IL37Q9NZH6 218 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 CFAP97Q9P2B7 532 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 MMP17Q9ULZ9 603 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 CHD8Q9HCK8 2581 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 A0A0A0MRY4 1105 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 FAM92AA1XBS5 289 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 DCDC2BA2VCK2 349 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 AP1G2O75843 785 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 ASS1P00966 412 aaKnown RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 ADH5P11766 374 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 PFKFB1P16118 471 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 OPRD1P41143 372 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 GRIA2P42262 883 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 SYKP43405 635 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 TNFRSF4P43489 277 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 PXNP49023 591 aaPredicted RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 SLC5A3P53794 718 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 GAD2Q05329 585 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 BYSLQ13895 437 aaKnown RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 PLA2G2CQ5R387 149 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 TTC39CQ8N584 583 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 KIAA0895Q8NCT3 520 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 FAXDC2Q96IV6 333 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 CNOT6LQ96LI5 555 aaKnown RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 SCAND2PQ9GZW5 306 aaPredicted RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 NACA2Q9H009 215 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 FAM124BQ9H5Z6 455 aaPredicted RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 SMYD3Q9H7B4 428 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 CYP3A43Q9HB55 503 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 PNPLA8Q9NP80 782 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 TLR8Q9NR97 1041 aaKnown RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 SMPD4Q9NXE4 827 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 TRAF3IP3Q9Y228 551 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 SH3BP1Q9Y3L3 701 aa12.63□□□□□ -0.39
UPF3B-204ENST00000619445 MYO18AQ92614 2054 aaKnown RBP12.63□□□□□ -0.39
UPF3B-204ENST00000619445 MYOFQ9NZM1 2061 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 CLDN5O00501 218 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 TNFRSF10BO14763 440 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 ADRB1P08588 477 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 ZDHHC11BP0C7U3 371 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 KRT13P13646 458 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 MPLP40238 635 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 PIK3CAP42336 1068 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 DPP6P42658 865 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 CASP4P49662 377 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 ZXDBP98169 803 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 IFRD2Q12894 506 aaPredicted RBP12.62□□□□□ -0.39
UPF3B-204ENST00000619445 PPM1JQ5JR12 505 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 EOGTQ5NDL2 527 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 CEP135Q66GS9 1140 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 SV2AQ7L0J3 742 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 RASSF3Q86WH2 238 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 FUKQ8N0W3 1084 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 CSNK1G1Q9HCP0 422 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 POLMQ9NP87 494 aaPredicted RBP12.62□□□□□ -0.39
UPF3B-204ENST00000619445 KRT82Q9NSB4 513 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 HPSEQ9Y251 543 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 NME7Q9Y5B8 376 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 NUP205Q92621 2012 aa12.62□□□□□ -0.39
UPF3B-204ENST00000619445 FAM237AA0A1B0GTK4 181 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 A0A1B0GVL5 298 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 K7EQS6 105 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 HOXC11O43248 304 aaPredicted RBP12.61□□□□□ -0.39
UPF3B-204ENST00000619445 COCHO43405 550 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 RHOBTB3O94955 611 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 KAT7O95251 611 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 VNN1O95497 513 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 FAM200BP0CF97 657 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 GBP1P32455 592 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 PSEN1P49768 467 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 VAMP7P51809 220 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 CACNA2D1P54289 1103 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 CDH8P55286 799 aa12.61□□□□□ -0.39
UPF3B-204ENST00000619445 INCA1Q0VD86 236 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms