RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FKBP9O95302 570 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 VIL1P09327 827 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 TFE3P19532 575 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 NUMBP49757 651 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 RGS4P49798 205 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 C10orf120Q5SQS8 335 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 FKBP9P1Q75LS8 142 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 SAMD3Q8N6K7 520 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 EPS8L1Q8TE68 723 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 DNAJC19Q96DA6 116 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 HIC2Q96JB3 615 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 RPRD1AQ96P16 312 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 SLITRK1Q96PX8 696 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 DDX50Q9BQ39 737 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 EFCAB1Q9HAE3 211 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 GPBP1L1Q9HC44 474 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 CYP4F12Q9HCS2 524 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 PRDM5Q9NQX1 630 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 NINJ2Q9NZG7 142 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 GOLGA4Q13439 2230 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 E9PBE3 544 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 MAN1A2O60476 641 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 KLHL41O60662 606 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 YY1P25490 414 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 PTPN4P29074 926 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 STRA8Q7Z7C7 330 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 TEKT4Q8WW24 435 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 FAM136AQ96C01 138 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 ZBTB45Q96K62 511 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 SLC4A9Q96Q91 983 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 GPR63Q9BZJ6 419 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 ASCC2Q9H1I8 757 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 TAS2R14Q9NYV8 317 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 BLOC1S6Q9UL45 172 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 BCL9O00512 1426 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 C16orf96A6NNT2 1141 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 WNT7AO00755 349 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 HSPA1AP0DMV8 641 aaKnown RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 HSPA1BP0DMV9 641 aaKnown RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 THRAP10827 490 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 LAMTOR4Q0VGL1 99 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 PTK2BQ14289 1009 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 AGAP9Q5VTM2 703 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 AADACL2Q6P093 401 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 METTL7BQ6UX53 244 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 CPB2Q96IY4 423 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 CYP3A43Q9HB55 503 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 UPP2O95045 317 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 F9P00740 461 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 CPA3P15088 417 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 CDH8P55286 799 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 PLOD1Q02809 727 aaPredicted RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 LRRC74AQ0VAA2 488 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 MPP3Q13368 585 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 SLC15A2Q16348 729 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 IL17AQ16552 155 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 ZRANB3Q5FWF4 1079 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 ZNF484Q5JVG2 852 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 CD302Q8IX05 232 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 VCPIP1Q96JH7 1222 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 APOL5Q9BWW9 433 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 CEP41Q9BYV8 373 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 UBP1Q9NZI7 540 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 TM9SF1O15321 606 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 STX7O15400 261 aaKnown RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 IRX1P78414 480 aaPredicted RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 SKOR1P84550 965 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 DMC1Q14565 340 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 R3HDM1Q15032 1099 aaKnown RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 PKN2Q16513 984 aaKnown RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 AASDHQ4L235 1098 aaPredicted RBP14.48□□□□□ -0.09
CPSF1-212ENST00000616140 ELMSAN1Q6PJG2 1045 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 ZNF555Q8NEP9 628 aa14.48□□□□□ -0.09
CPSF1-212ENST00000616140 MYO1GB0I1T2 1018 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 PLIN5Q00G26 463 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 DSG1Q02413 1049 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 ZCWPW2Q504Y3 356 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 SEL1L3Q68CR1 1132 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 C1orf186Q6ZWK4 172 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 IARS2Q9NSE4 1012 aaKnown RBP14.47□□□□□ -0.09
CPSF1-212ENST00000616140 RIC8BQ9NVN3 520 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 CYBBP04839 570 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 KRT16P08779 473 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 CDH2P19022 906 aaPredicted RBP14.47□□□□□ -0.09
CPSF1-212ENST00000616140 GRK2P25098 689 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 SERPINB8P50452 374 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 POU4F1Q01851 419 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 EVX2Q03828 476 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 TTMPQ5BVD1 217 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 ZC3H12BQ5HYM0 836 aaKnown RBP14.47□□□□□ -0.09
CPSF1-212ENST00000616140 BAP1Q92560 729 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 TSPAN16Q9UKR8 245 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 ACOT9Q9Y305 439 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 MAGEA13PA6NCF6 341 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 PCYT1AP49585 367 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 KPNB1Q14974 876 aaKnown RBP14.47□□□□□ -0.09
CPSF1-212ENST00000616140 MTFR1Q15390 333 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 BHMTQ93088 406 aa14.47□□□□□ -0.09
CPSF1-212ENST00000616140 AVENQ9NQS1 362 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms