RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ALCAMQ13740 583 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 FAM153CQ494X1 144 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 PABPC1LQ4VXU2 614 aaKnown RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 UBE2R2Q712K3 238 aaPredicted RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 RAPGEFL1Q9UHV5 662 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 LRRC53A6NM62 1247 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 TRIM13O60858 407 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 UFL1O94874 794 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 NUDT17P0C025 328 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 RPA1P27694 616 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 ZAP70P43403 619 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 KYAT1Q16773 422 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 REM2Q8IYK8 340 aaPredicted RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 TEKT3Q9BXF9 490 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 TPK1Q9H3S4 243 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 CDYLQ9Y232 598 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 PHKA2P46019 1235 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 SERPINB9P50453 376 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 NFIAQ12857 509 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 ERICH5Q6P6B1 374 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 KIF18BQ86Y91 864 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 KBTBD2Q8IY47 623 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 SYTL1Q8IYJ3 562 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 TGFBRAP1Q8WUH2 860 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 YME1L1Q96TA2 773 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 PUS3Q9BZE2 481 aaKnown RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 CYTH4Q9UIA0 394 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 SNRPAP09012 282 aaKnown RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 FASP25445 335 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 ITGA1P56199 1179 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 YWHAEP62258 255 aaKnown RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 CLCA4Q14CN2 919 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 PROSER2Q86WR7 435 aaPredicted RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 SIPA1Q96FS4 1042 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 NUAK2Q9H093 628 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 DENND2DQ9H6A0 471 aaPredicted RBP5.12□□□□□ -1.59
VPS13D-213ENST00000613099 IFT52Q9Y366 437 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 C3P01024 1663 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 SHPRHQ149N8 1683 aa5.12□□□□□ -1.59
VPS13D-213ENST00000613099 C2CD2LO14523 706 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 CASP2P42575 452 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TPTEP56180 551 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 GABPAQ06546 454 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 COL19A1Q14993 1142 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 C6orf89Q6UWU4 347 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 EPS8L3Q8TE67 593 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 RTFDC1Q9BY42 306 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 SNX13Q9Y5W8 968 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 LAMB4A4D0S4 1761 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 A0A0J9YVX5 310 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 KRT87PA6NCN2 255 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 HSMCR30P0CW71 290 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 MYL4P12829 197 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TALDO1P37837 337 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 POLD3Q15054 466 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 PCBP1Q15365 356 aaKnown RBP eCLIP5.11□□□□□ -1.591e-7■■■■■ 26.9
VPS13D-213ENST00000613099 PTPROQ16827 1216 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TTC29Q8NA56 475 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TSEN2Q8NCE0 465 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 MROH7-TTC4A0A0A0MT08 1334 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 WDR17Q8IZU2 1322 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 MYL2P10916 166 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 RORAP35398 523 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 CCDC58Q4VC31 144 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 C12orf60Q5U649 245 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 DCP2Q8IU60 420 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 ASZ1Q8WWH4 475 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 HDAC2Q92769 488 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 ENTPD7Q9NQZ7 604 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TMOD3Q9NYL9 352 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 MYPNQ86TC9 1320 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 LGR5O75473 907 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 RPS6P62753 249 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 NIPAL4Q0D2K0 466 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 AOC3Q16853 763 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 PPP2R2DQ66LE6 453 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 SLC22A8Q8TCC7 542 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 NUDT12Q9BQG2 462 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 MTG1Q9BT17 334 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 GPHNQ9NQX3 736 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TMEM9Q9P0T7 183 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 NAALADL1Q9UQQ1 740 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 RGPD5Q99666 1765 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TMEM221A6NGB7 291 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 KCNK1O00180 336 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 DBTP11182 482 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 KHDC1Q4VXA5 237 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 POLR1BQ9H9Y6 1135 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 NEK6Q9HC98 313 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 TOR4AQ9NXH8 423 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 NEU2Q9Y3R4 380 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 KDM3AQ9Y4C1 1321 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 CCDC195A0A1B0GUA6 201 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 ISPDA4D126 451 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 NAB1Q13506 487 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 ZCCHC8Q6NZY4 707 aaKnown RBP5.11□□□□□ -1.59
VPS13D-213ENST00000613099 PYDC1Q8WXC3 89 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 OSBP2Q969R2 916 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 ACAD9Q9H845 621 aa5.11□□□□□ -1.59
VPS13D-213ENST00000613099 SNRKQ9NRH2 765 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms