RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PIP4P1Q86T03 277 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 SFR1Q86XK3 245 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 WDR49Q8IV35 697 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 CCDC65Q8IXS2 484 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 GPD1LQ8N335 351 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 ALLCQ8N6M5 410 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 IL17RCQ8NAC3 791 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 TXNDC5Q8NBS9 432 aaKnown RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 ENGASEQ8NFI3 743 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 HMGB4Q8WW32 186 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 XPO6Q96QU8 1125 aaKnown RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 MMS19Q96T76 1030 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 PKMYT1Q99640 499 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 NACA2Q9H009 215 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 LINC00597Q9H2U6 94 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 INTS13Q9NVM9 706 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 WDR35Q9P2L0 1181 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 PILRBQ9UKJ0 227 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 SMC3Q9UQE7 1217 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 APOBEC2Q9Y235 224 aaKnown RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 SH3BP1Q9Y3L3 701 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 STARD13Q9Y3M8 1113 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 CPQQ9Y646 472 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 TSC2P49815 1807 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 ASH1LQ9NR48 2969 aaKnown RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 SPTA1P02549 2419 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 ABCA7Q8IZY2 2146 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 SCN1AP35498 2009 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 LAMA5O15230 3695 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 TCRBV21S2A2A0A5A6 115 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 C2orf78A6NCI8 922 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 GFRA2O00451 464 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 ARHGAP33O14559 1287 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 GIPC1O14908 333 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 HOXC11O43248 304 aaPredicted RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 STAU1O95793 577 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 ABL1P00519 1130 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 OAS1P00973 400 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 MBL2P11226 248 aaPredicted RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 P4HA1P13674 534 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 IDEP14735 1019 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 BDNFP23560 247 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 ACAT1P24752 427 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 YWHAQP27348 245 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 GJB2P29033 226 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 NTSR1P30989 418 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 GNL1P36915 607 aaPredicted RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 KIR2DL1P43626 348 aaPredicted RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 GPR15P49685 360 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 AP3M2P53677 418 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 TNNC1P63316 161 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 AMPD3Q01432 767 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 TRPC3Q13507 836 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 COL9A2Q14055 689 aaPredicted RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 STARD3Q14849 445 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 SOWAHAQ2M3V2 549 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 MAP7D1Q3KQU3 841 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 HECTD3Q5T447 861 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 SDHAF4Q5VUM1 108 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 LARP1BQ659C4 914 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 RHBDF2Q6PJF5 856 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 IL27RAQ6UWB1 636 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 HS2ST1Q7LGA3 356 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 LIMS2Q7Z4I7 341 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 TMEFF1Q8IYR6 380 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 NUP93Q8N1F7 819 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 CCDC33Q8N5R6 958 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 ZNF513Q8N8E2 541 aaPredicted RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 RIN3Q8TB24 985 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 EZH1Q92800 747 aaPredicted RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 MYLPFQ96A32 169 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 TNIP3Q96KP6 325 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 FNBP1Q96RU3 617 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 SLC22A12Q96S37 553 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 GTPBP2Q9BX10 602 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 STRA6Q9BX79 667 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 MTMR12Q9C0I1 747 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 CUEDC2Q9H467 287 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 DNAAF2Q9NVR5 837 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 TBC1D7Q9P0N9 293 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 CFAP97Q9P2B7 532 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 CGNQ9P2M7 1197 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 LSM7Q9UK45 103 aaKnown RBP6.69□□□□□ -1.34
CUX1-220ENST00000607092 TCHHQ07283 1943 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 DENND4CQ5VZ89 1909 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 MYO18BQ8IUG5 2567 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 SPEGQ15772 3267 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 NUP205Q92621 2012 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 KALRNO60229 2985 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 ATG2BQ96BY7 2078 aa6.69□□□□□ -1.34
CUX1-220ENST00000607092 PI4KAP42356 2102 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 THADAQ6YHU6 1953 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 EIF4E1BA6NMX2 242 aaKnown RBP6.68□□□□□ -1.34
CUX1-220ENST00000607092 A8MXQ7 604 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 PATE3B3GLJ2 98 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 F8VP50 259 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 SGK1O00141 431 aa6.68□□□□□ -1.34
CUX1-220ENST00000607092 EIF3DO15371 548 aaKnown RBP eCLIP6.68□□□□□ -1.34
CUX1-220ENST00000607092 HYAL3O43820 417 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms