RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 KIF3AQ9Y496 699 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 PCDHB13Q9Y5F0 798 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 SRPRBQ9Y5M8 271 aaKnown RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 KIAA1549LQ6ZVL6 1849 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 MYO16Q9Y6X6 1858 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 MYO18AQ92614 2054 aaKnown RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 FAM92AA1XBS5 289 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 ZNF233A6NK53 670 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 H3BQV1 296 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 CLDN5O00501 218 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 SLC9A3R1O14745 358 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 HOXC11O43248 304 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 TGFB1I1O43294 461 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 COCHO43405 550 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 TULP3O75386 442 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 GCNT3O95395 438 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 APODP05090 189 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 SERPINF2P08697 491 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 KRT19P08727 400 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 ADH5P11766 374 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 GNL1P36915 607 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 PI4KAP42356 2102 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 MAPK8P45983 427 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 SIM1P81133 766 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 RABEP1Q15276 862 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 MAPRE1Q15691 268 aaKnown RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 DUOXA1Q1HG43 343 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 DUOXA2Q1HG44 320 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 MDH1BQ5I0G3 518 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 EOGTQ5NDL2 527 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 RRAGBQ5VZM2 374 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 LYSMD4Q5XG99 296 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 LARP1BQ659C4 914 aaKnown RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 SV2BQ7L1I2 683 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 ARMCX6Q7L4S7 300 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 TRAPPC11Q7Z392 1133 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 BRAPQ7Z569 592 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 TMEM25Q86YD3 366 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 GPD1LQ8N335 351 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 OR2I1PQ8NGU4 316 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 ZCCHC14Q8WYQ9 949 aaKnown RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 P2RY11Q96G91 374 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 ZNF419Q96HQ0 510 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 KCNK16Q96T55 309 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 ACOX2Q99424 681 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 ZNF518BQ9C0D4 1074 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 XYLT2Q9H1B5 865 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 DPEP3Q9H4B8 488 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 POLMQ9NP87 494 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 ARHGEF4Q9NR80 690 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 DNAAF2Q9NVR5 837 aaKnown RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 CHORDC1Q9UHD1 332 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 LHX6Q9UPM6 363 aa6.51□□□□□ -1.37
VRK3-220ENST00000600259 MORC2Q9Y6X9 1032 aaPredicted RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 ZNF638Q14966 1978 aaKnown RBP6.51□□□□□ -1.37
VRK3-220ENST00000600259 ATXN2Q99700 1313 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 ASXL3Q9C0F0 2248 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 APC2O95996 2303 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 GCN1Q92616 2671 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 MYOFQ9NZM1 2061 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 IGHV1OR15-9A0A0B4J2B8 117 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TCRBV21S2A2A0A5A6 115 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TBC1D3BA6NDS4 549 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 ARHGAP33O14559 1287 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TRIM66O15016 1216 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 KIAA0391O15091 583 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 MAP3K13O43283 966 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 STAU1O95793 577 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 ADH1CP00326 375 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TMEM191BP0C7N4 346 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 CISD3P0C7P0 127 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 DPP6P42658 865 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 CYP27A1Q02318 531 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 GAD2Q05329 585 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 KDSRQ06136 332 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 ZNF33AQ06730 810 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 MYO1EQ12965 1108 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 RESTQ13127 1097 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 ALCAMQ13740 583 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 BYSLQ13895 437 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 ACAP1Q15027 740 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 SURF1Q15526 300 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TDRD10Q5VZ19 366 aaKnown RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 ERICH6BQ5W0A0 696 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 FAM173BQ6P4H8 233 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 HTR3DQ70Z44 454 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 EPM2AIP1Q7L775 607 aaPredicted RBP6.5□□□□□ -1.37
VRK3-220ENST00000600259 TTC30AQ86WT1 665 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 PROSER1Q86XN7 944 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 WDR49Q8IV35 697 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 BBS7Q8IWZ6 715 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 SYCP3Q8IZU3 236 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 NUP93Q8N1F7 819 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 MINDY1Q8N5J2 469 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 DEFB119Q8N690 84 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 NAT16Q8N8M0 369 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 TERB1Q8NA31 727 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 ZMIZ2Q8NF64 920 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 SCAMP5Q8TAC9 235 aa6.5□□□□□ -1.37
VRK3-220ENST00000600259 CEP76Q8TAP6 659 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms