RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 DPP6P42658 865 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 KIR2DL1P43626 348 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 SLC6A11P48066 632 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 DHPSP49366 369 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 SNRPFP62306 86 aaKnown RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 IRX4P78413 519 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 ZNF252P-AS1Q0IIN9 211 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 LMAN2Q12907 356 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 SNRNP35Q16560 246 aaKnown RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 TMEM92Q6UXU6 159 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 LPCAT2Q7L5N7 544 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 HS2ST1Q7LGA3 356 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 IL17RCQ8NAC3 791 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 TXNDC5Q8NBS9 432 aaKnown RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 PDZD8Q8NEN9 1154 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 OR6B3Q8NGW1 331 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 KCNV2Q8TDN2 545 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 WHAMMQ8TF30 809 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 OVCA2Q8WZ82 227 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 PIGKQ92643 395 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 OTUB2Q96DC9 234 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 SPACA7Q96KW9 195 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 FNBP1Q96RU3 617 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 DUSP9Q99956 384 aaKnown RBP13.31□□□□□ -0.28
TRIM28-212ENST00000597995 SMPD4Q9NXE4 827 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 FAM13BQ9NYF5 915 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 CFAP97Q9P2B7 532 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 WASF3Q9UPY6 502 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 HPSEQ9Y251 543 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 NME7Q9Y5B8 376 aa13.31□□□□□ -0.28
TRIM28-212ENST00000597995 FRYQ5TBA9 3013 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 ANTXRLA6NF34 631 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 PATE3B3GLJ2 98 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 SGK1O00141 431 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 RTN3O95197 1032 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-212ENST00000597995 KLF8O95600 359 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-212ENST00000597995 ABL1P00519 1130 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 SLFN14P0C7P3 912 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 MBL2P11226 248 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-212ENST00000597995 HNRNPLP14866 589 aaKnown RBP eCLIP13.3□□□□□ -0.28
TRIM28-212ENST00000597995 PFKFB1P16118 471 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 TNNI1P19237 187 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 CMA1P23946 247 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 TIE1P35590 1138 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 TNNC1P63316 161 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 PSMD6Q15008 389 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 WDR72Q3MJ13 1102 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 PREPLQ4J6C6 727 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-212ENST00000597995 UNQ6494/PRO21346Q6UXR6 183 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 SYT12Q8IV01 421 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 NELFCDQ8IXH7 590 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 NUP93Q8N1F7 819 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 ALLCQ8N6M5 410 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 KDF1Q8NAX2 398 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-212ENST00000597995 PAGE5Q96GU1 130 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 CGRRF1Q99675 332 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 SLC39A2Q9NP94 309 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 ARHGEF4Q9NR80 690 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 AGPAT3Q9NRZ7 376 aa13.3□□□□□ -0.28
TRIM28-212ENST00000597995 GON4LQ3T8J9 2241 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 MYO18AQ92614 2054 aaKnown RBP13.29□□□□□ -0.28
TRIM28-212ENST00000597995 MYOFQ9NZM1 2061 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 FAM237AA0A1B0GTK4 181 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 PVALEFA0A1B0GWK0 134 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 C1QTNF9BB2RNN3 333 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 CLIC2O15247 247 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 MAP3K13O43283 966 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 C1QTNF9P0C862 333 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 DLATP10515 647 aaKnown RBP13.29□□□□□ -0.28
TRIM28-212ENST00000597995 ADH5P11766 374 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 YWHAQP27348 245 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 ATICP31939 592 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 TUBP50607 506 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 CACNA2D1P54289 1103 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 GAD2Q05329 585 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 MESP2Q0VG99 397 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 FOXC1Q12948 553 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 BMT2Q1RMZ1 405 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 MAP7D1Q3KQU3 841 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 LY6G5CQ5SRR4 150 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 EMC10Q5UCC4 262 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 SNX30Q5VWJ9 437 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 C12orf40Q86WS4 652 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 TTC30AQ86WT1 665 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 SFTPA1Q8IWL2 248 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 PHTF2Q8N3S3 785 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 RDH13Q8NBN7 331 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 RLN3Q8WXF3 142 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 SPATA32Q96LK8 384 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 NUSAP1Q9BXS6 441 aaKnown RBP13.29□□□□□ -0.28
TRIM28-212ENST00000597995 B3GNT5Q9BYG0 378 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 ZNF518BQ9C0D4 1074 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 GZF1Q9H116 711 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-212ENST00000597995 TMEM30AQ9NV96 361 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 COMMD8Q9NX08 183 aa13.29□□□□□ -0.28
TRIM28-212ENST00000597995 ASCC3Q8N3C0 2202 aaKnown RBP13.29□□□□□ -0.28
TRIM28-212ENST00000597995 PCNX2A6NKB5 2137 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 PI4KAP42356 2102 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 TMEM8BA6NDV4 472 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms