RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	VNN1	O95497	513 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	CAVIN2	O95810	425 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	C4BPA	P04003	597 aa	Known RBP	11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	FAM163B	P0C2L3	166 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	CHRM1	P11229	460 aa	Predicted RBP	11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	ADH5	P11766	374 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	CCDC130	P13994	396 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	BCKDHB	P21953	392 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	PGF	P49763	221 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	SLC5A3	P53794	718 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	DLG4	P78352	724 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	DNM1	Q05193	864 aa	Known RBP	11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	STK4	Q13043	487 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	ZNF667	Q5HYK9	610 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	EMC10	Q5UCC4	262 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	TMEM92	Q6UXU6	159 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	PAQR9	Q6ZVX9	377 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	ACOT1	Q86TX2	421 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	CEP57L1	Q8IYX8	460 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	FUK	Q8N0W3	1084 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	ALLC	Q8N6M5	410 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	SPRYD3	Q8NCJ5	442 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	MDGA1	Q8NFP4	955 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	PARD3B	Q8TEW8	1205 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	DDX1	Q92499	740 aa	Known RBP	11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	SNX21	Q969T3	373 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	WBP2	Q969T9	261 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	EDEM2	Q9BV94	578 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	CCSER2	Q9H7U1	834 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	VRTN	Q9H8Y1	702 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.18	□□□□□ -0.62	9e-10	■■■■■ 86.9
LSM4-205	ENST00000597776	KRT82	Q9NSB4	513 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	GMIP	Q9P107	970 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	HMGXB4	Q9UGU5	601 aa		11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	CHORDC1	Q9UHD1	332 aa	Predicted RBP	11.18	□□□□□ -0.62
LSM4-205	ENST00000597776	ATP8B3	O60423	1300 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	SGK1	O00141	431 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	TNFRSF10B	O14763	440 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	AP1G2	O75843	785 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	RTN3	O95197	1032 aa	Predicted RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	KAT7	O95251	611 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	KLF8	O95600	359 aa	Predicted RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	ADH1C	P00326	375 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	HSP90AA1	P07900	732 aa	Known RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	SLFN14	P0C7P3	912 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	IRF1	P10914	325 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	TIE1	P35590	1138 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	CLDN10	P78369	228 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	CRY1	Q16526	586 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	KMT5B	Q4FZB7	885 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	USP39	Q53GS9	565 aa	Known RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	LY6G5C	Q5SRR4	150 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	PMS2CL	Q68D20	193 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	RNF43	Q68DV7	783 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	RASSF3	Q86WH2	238 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	DDX42	Q86XP3	938 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	HSCB	Q8IWL3	235 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	IL17RC	Q8NAC3	791 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	TXNDC5	Q8NBS9	432 aa	Known RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	PDZD8	Q8NEN9	1154 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	CCDC26	Q8TAB7	109 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	GOLGA5	Q8TBA6	731 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	SMARCD1	Q96GM5	515 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	PAGE5	Q96GU1	130 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	CHAMP1	Q96JM3	812 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	CNOT6L	Q96LI5	555 aa	Known RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	PNKP	Q96T60	521 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	KCTD10	Q9H3F6	313 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	ARHGEF4	Q9NR80	690 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	EXOC1	Q9NV70	894 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	DMAC2	Q9NW81	257 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	CACNA1B	Q00975	2339 aa		11.17	□□□□□ -0.62
LSM4-205	ENST00000597776	ZFHX4	Q86UP3	3567 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	E2F8	A0AVK6	867 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	LNP1	A1A4G5	178 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	PATE3	B3GLJ2	98 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	BEST1	O76090	585 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	NR3C1	P04150	777 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	APOD	P05090	189 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	EIF2D	P41214	584 aa	Known RBP	11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	NDST1	P52848	882 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	MRPS21	P82921	87 aa	Known RBP	11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	HECTD3	Q5T447	861 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	SPOPL	Q6IQ16	392 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	BBS7	Q8IWZ6	715 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	PHTF2	Q8N3S3	785 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	FRMD1	Q8N878	549 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	KIAA1958	Q8N8K9	716 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	NAT16	Q8N8M0	369 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	C12orf29	Q8N999	325 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	ZMIZ2	Q8NF64	920 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	SLC2A14	Q8TDB8	520 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	RLN3	Q8WXF3	142 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	OVCA2	Q8WZ82	227 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	TNIP3	Q96KP6	325 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	SMO	Q99835	787 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	LSM14B	Q9BX40	385 aa	Known RBP	11.16	□□□□□ -0.62

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