RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 SV2BQ7L1I2 683 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 SYT12Q8IV01 421 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 SYCP3Q8IZU3 236 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 PHTF2Q8N3S3 785 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 CEP295NLQ96MC4 621 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 OLFML3Q9NRN5 406 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 CFAP97Q9P2B7 532 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 STK17AQ9UEE5 414 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 CCDC39Q9UFE4 941 aa17.54■□□□□ 0.4
SHKBP1-215ENST00000597649 LOC400499M0QZD8 3231 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 FRMD3A2A2Y4 597 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 TMEM8BA6NDV4 472 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 F8VP50 259 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 ABL1P00519 1130 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 ITPKAP23677 461 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 NOP14P78316 857 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 LMAN2Q12907 356 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 TAF10Q12962 218 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 MYO1EQ12965 1108 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 RRAGBQ5VZM2 374 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 KIAA1958Q8N8K9 716 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 GLIS3Q8NEA6 775 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 MYCBPAPQ8TBZ2 947 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 WHAMMQ8TF30 809 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 HMGB4Q8WW32 186 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 GBP4Q96PP9 640 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 MRPL45Q9BRJ2 306 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 NUSAP1Q9BXS6 441 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 FAM13BQ9NYF5 915 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 PILRBQ9UKJ0 227 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 KLK13Q9UKR3 277 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 HCN2Q9UL51 889 aa17.53■□□□□ 0.4
SHKBP1-215ENST00000597649 ATXN2Q99700 1313 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 CST3P01034 146 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 APODP05090 189 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 IDEP14735 1019 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 EIF2DP41214 584 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 GRIA2P42262 883 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 TNFRSF4P43489 277 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 FAM193AP78312 1265 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 KDSRQ06136 332 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 SEMA3BQ13214 749 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 DUOXA2Q1HG44 320 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 MDH1BQ5I0G3 518 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 LY6G5CQ5SRR4 150 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 PEAR1Q5VY43 1037 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 SLC23A3Q6PIS1 610 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 CBWD2Q8IUF1 395 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 GPD1LQ8N335 351 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 DEFB119Q8N690 84 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 ZCCHC14Q8WYQ9 949 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 ANKRD36BP1Q96IX9 119 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 C8orf48Q96LL4 319 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 PANK2Q9BZ23 570 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 ARHGEF4Q9NR80 690 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 NEUROG3Q9Y4Z2 214 aa17.52■□□□□ 0.4
SHKBP1-215ENST00000597649 A0A087X0B3 334 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 SLC9A3R1O14745 358 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 ADH5P11766 374 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 ANXA13P27216 316 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 HOXD13P35453 343 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 GNL1P36915 607 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 PPP3CCP48454 512 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 SIM1P81133 766 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 MAPRE1Q15691 268 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 HSF5Q4G112 596 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 SPDYCQ5MJ68 293 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 EOGTQ5NDL2 527 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 LYSMD4Q5XG99 296 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 LRSAM1Q6UWE0 723 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 ZFRQ96KR1 1074 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 MMS19Q96T76 1030 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 DPEP3Q9H4B8 488 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 POLMQ9NP87 494 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 BCCIPQ9P287 314 aaKnown RBP eCLIP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 MSRB2Q9Y3D2 182 aa17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 HELZP42694 1942 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-215ENST00000597649 TCRBV21S2A2A0A5A6 115 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 UPK3BL1B0FP48 263 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 UPK3BL2E5RIL1 263 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 TAF4O00268 1085 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 CLDN5O00501 218 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 TRIM66O15016 1216 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 TRIM24O15164 1050 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 MBL2P11226 248 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 PTPN1P18031 435 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 RING1Q06587 406 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 TRAPPC11Q7Z392 1133 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 ETFBKMTQ8IXQ9 262 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 PGBD3Q8N328 593 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 NAT16Q8N8M0 369 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 HPS3Q969F9 1004 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 WBP2Q969T9 261 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 SPACA7Q96KW9 195 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 ZNF518BQ9C0D4 1074 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 SLC32A1Q9H598 525 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 PANK4Q9NVE7 773 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 IGSF10Q6WRI0 2623 aa17.5■□□□□ 0.39
SHKBP1-215ENST00000597649 TNRC6BQ9UPQ9 1833 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-215ENST00000597649 ZNF233A6NK53 670 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms