RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 DDX43Q9NXZ2 648 aaKnown RBP15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 ARMCX1Q9P291 453 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 WDR35Q9P2L0 1181 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 CYTH4Q9UIA0 394 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 PLLPQ9Y342 182 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 CHADO15335 359 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 WEE2P0C1S8 567 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 YWHAGP61981 247 aaKnown RBP eCLIP15.48■□□□□ 0.074e-6■■□□□ 14.2
SMARCA4-219ENST00000592604 GSTA3Q16772 222 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 CDHR3Q6ZTQ4 885 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 NET1Q7Z628 596 aaPredicted RBP15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 ALYREFQ86V81 257 aaKnown RBP15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 SPATA18Q8TC71 538 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 ZFAND2BQ8WV99 257 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 ATG4CQ96DT6 458 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 WNK4Q96J92 1243 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 TRAPPC9Q96Q05 1148 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 ZNF184Q99676 751 aaPredicted RBP15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 NIFKQ9BYG3 293 aaKnown RBP15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 CPSF2Q9P2I0 782 aaKnown RBP15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 TJP2Q9UDY2 1190 aa15.48■□□□□ 0.07
SMARCA4-219ENST00000592604 ADCY3O60266 1144 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ENDOD1O94919 500 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 PSMC1P62191 440 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ROR2Q01974 943 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ACAP1Q15027 740 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 DUOXA2Q1HG44 320 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 MEX3CQ5U5Q3 659 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 RNF220Q5VTB9 566 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ANGEL2Q5VTE6 544 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 CWF19L1Q69YN2 538 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 PRPF39Q86UA1 669 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 TREML1Q86YW5 311 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 KLHL23Q8NBE8 558 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 APBB2Q92870 758 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 RSAD1Q9HA92 442 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ZNF302Q9NR11 478 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 MKS1Q9NXB0 559 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ANGPTL2Q9UKU9 493 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 PLA2G4CQ9UP65 541 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 C2CD2Q9Y426 696 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 TRIM49D1C9J1S8 452 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ATP5BP06576 529 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 SNRPAP09012 282 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 HARSP12081 509 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 AMPD1P23109 780 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ASPAP45381 313 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 NOMO1Q15155 1222 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ATG16L1Q676U5 607 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ZC3H18Q86VM9 953 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 SMC1BQ8NDV3 1235 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 SLC7A3Q8WY07 619 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 FRMD8Q9BZ67 464 aaPredicted RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 IQCGQ9H095 443 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 DNAJB4Q9UDY4 337 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 TTLL3Q9Y4R7 772 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 I3L4J1 428 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 TRUB2O95900 331 aaKnown RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 MIPP30301 263 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 CCNFP41002 786 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 NRLP54845 237 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 ROR1Q01973 937 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 BST1Q10588 318 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 KRT27Q7Z3Y8 459 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 XYLT1Q86Y38 959 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 KBTBD2Q8IY47 623 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 REPS2Q8NFH8 660 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 FAM161BQ96MY7 647 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 NR1H4Q96RI1 486 aaPredicted RBP15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 PIDD1Q9HB75 910 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 SIRPGQ9P1W8 387 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 WASF2Q9Y6W5 498 aa15.47■□□□□ 0.07
SMARCA4-219ENST00000592604 TRDMT1O14717 391 aaKnown RBP15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 KRT37O76014 449 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 TM7SF2O76062 418 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 MTMR2Q13614 643 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 CAPSQ13938 189 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 SURF1Q15526 300 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 TRMT5Q32P41 509 aaKnown RBP15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 SCUBE1Q8IWY4 988 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 EMC1Q8N766 993 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 RBM15BQ8NDT2 890 aaKnown RBP15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 E2F7Q96AV8 911 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 XYLT2Q9H1B5 865 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 PCSK1NQ9UHG2 260 aa15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 COL11A1P12107 1806 aaPredicted RBP15.46■□□□□ 0.07
SMARCA4-219ENST00000592604 TTLL13PA6NNM8 815 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 MED7O43513 233 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 SNUPNO95149 360 aaKnown RBP15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 KCNA3P22001 575 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 CACNA2D1P54289 1103 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 MRPS5P82675 430 aaKnown RBP15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 SP2Q02086 613 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 TRPC3Q13507 836 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 TAF5Q15542 800 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 LGSNQ5TDP6 509 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 DARS2Q6PI48 645 aaKnown RBP15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 TRIM74Q86UV6 250 aa15.46■□□□□ 0.06
SMARCA4-219ENST00000592604 TRIM73Q86UV7 250 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms