RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	FAM90A18P	A6NE21	464 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	FAM90A16P	A6NEW6	464 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	FAM90A9P	A6NNJ1	464 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	FAM90A5P	A8MXJ8	464 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	CXorf49	A8MYA2	514 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	STX16-NPEPL1	H3BU86	382 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	STX16	O14662	325 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	AGFG2	O95081	481 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	RPN1	P04843	607 aa	Known RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	SLC3A2	P08195	630 aa	Known RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	FAM90A15P	P0C7V4	464 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	FAM90A14P	P0C7W9	464 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	PIM1	P11309	404 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	ALOX12	P18054	663 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	FDXR	P22570	491 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	ABCD3	P28288	659 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	CSF2RB	P32927	897 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	HOXD13	P35453	343 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	TOP3A	Q13472	1001 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	ICAM4	Q14773	271 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	EEA1	Q15075	1411 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	PCOLCE	Q15113	449 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	MANEAL	Q5VSG8	457 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	SLFN13	Q68D06	897 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	ANKS6	Q68DC2	871 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	MRNIP	Q6NTE8	343 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	ZNF365	Q70YC5	407 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	MED25	Q71SY5	747 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	MROH2B	Q7Z745	1585 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	CIR1	Q86X95	450 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	CREBRF	Q8IUR6	639 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	NRSN1	Q8IZ57	195 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	TMIE	Q8NEW7	156 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	GCDH	Q92947	438 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	RPL10L	Q96L21	214 aa	Known RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	TIGD1	Q96MW7	591 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	NAP1L5	Q96NT1	182 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	PPP1R9B	Q96SB3	815 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	MESP1	Q9BRJ9	268 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	SPATA5L1	Q9BVQ7	753 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	C1QTNF3	Q9BXJ4	246 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	PEG3	Q9GZU2	1588 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	PLSCR4	Q9NRQ2	329 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	PDS5B	Q9NTI5	1447 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	NSMCE4A	Q9NXX6	385 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	NCDN	Q9UBB6	729 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	PRDM4	Q9UKN5	801 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	NAP1L2	Q9ULW6	460 aa	Predicted RBP	5.44	□□□□□ -1.54
SS18-223	ENST00000583595	HPSE	Q9Y251	543 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	DNAJC16	Q9Y2G8	782 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	DERA	Q9Y315	318 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	RPGRIP1L	Q68CZ1	1315 aa		5.44	□□□□□ -1.54
SS18-223	ENST00000583595	LAMC3	Q9Y6N6	1575 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595		E9PLN8	166 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595		J3KTA2	159 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	HMGCR	P04035	888 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	CNP	P09543	421 aa	Known RBP	5.43	□□□□□ -1.54
SS18-223	ENST00000583595	CPA1	P15085	419 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	MST1	P26927	711 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	MRE11	P49959	708 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	CCR9	P51686	369 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	RBM5	P52756	815 aa	Known RBP eCLIP	5.43	□□□□□ -1.54
SS18-223	ENST00000583595	RAP2B	P61225	183 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	GALNT2	Q10471	571 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	RAB11FIP2	Q7L804	512 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	REXO1L1P	Q8IX06	675 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	NGEF	Q8N5V2	710 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	NKAIN3	Q8N8D7	197 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	DNER	Q8NFT8	737 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	5.43	□□□□□ -1.54
SS18-223	ENST00000583595	RSC1A1	Q92681	617 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	DDX17	Q92841	729 aa	Known RBP	5.43	□□□□□ -1.54
SS18-223	ENST00000583595	DVL3	Q92997	716 aa	Predicted RBP	5.43	□□□□□ -1.54
SS18-223	ENST00000583595	GRAMD1A	Q96CP6	724 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	TTC14	Q96N46	770 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	ASB2	Q96Q27	587 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	MED15	Q96RN5	788 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	VKORC1	Q9BQB6	163 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	IMPG2	Q9BZV3	1241 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	RMI1	Q9H9A7	625 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	FSCN3	Q9NQT6	498 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	ZSCAN32	Q9NX65	697 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	CEP72	Q9P209	647 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	VPS28	Q9UK41	221 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	CA14	Q9ULX7	337 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	TBX20	Q9UMR3	447 aa		5.43	□□□□□ -1.54
SS18-223	ENST00000583595	TDRD9	Q8NDG6	1382 aa	Known RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	PNMA6E	A0A0J9YXQ4	647 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595		B4DLN1	442 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	CSF1	P09603	554 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ZNF888	P0CJ79	500 aa	Predicted RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	AR	P10275	920 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	MEOX1	P50221	254 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	BPIFB4	P59827	614 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ARF3	P61204	181 aa	Predicted RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ARF1	P84077	181 aa	Known RBP	5.42	□□□□□ -1.54
SS18-223	ENST00000583595	ROR1	Q01973	937 aa		5.42	□□□□□ -1.54
SS18-223	ENST00000583595	PTH1R	Q03431	593 aa		5.42	□□□□□ -1.54

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