RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 XPNPEP3Q9NQH7 507 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 TBCCD1Q9NVR7 557 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 HDAC9Q9UKV0 1011 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 MAGED2Q9UNF1 606 aaPredicted RBP4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 PCDHGB2Q9Y5G2 931 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 RAD54BQ9Y620 910 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 A0A087WV62 115 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 AQP7P3A6NL99 342 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 FFAR2O15552 330 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 CREB3O43889 395 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 ERN1O75460 977 aaKnown RBP4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 SKAP2O75563 359 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 GPANK1O95872 356 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 IL1R1P14778 569 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 ITGALP20701 1170 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 FGFR4P22455 802 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 KELP23276 732 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 ANXA11P50995 505 aaKnown RBP4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 GRM1Q13255 1194 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 BLMHQ13867 455 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 MPEG1Q2M385 716 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 C4orf46Q504U0 113 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 KLHDC7AQ5VTJ3 777 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 SFRP4Q6FHJ7 346 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 KRT28Q7Z3Y7 464 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 KRT73Q86Y46 540 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 MAPKAPK5Q8IW41 473 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 ZNF527Q8NB42 609 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 PSD4Q8NDX1 1056 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 POC1BQ8TC44 478 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 SLC46A1Q96NT5 459 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 MESP1Q9BRJ9 268 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 ZCWPW1Q9H0M4 648 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 HEYLQ9NQ87 328 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 SPATA31A3Q5VYP0 1347 aa4.44□□□□□ -1.7
SMCHD1-209ENST00000583441 A0A1W2PS29 197 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 GOLGA6L3A6NEY3 463 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 TOR1BO14657 336 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PLA2G6O60733 806 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PRSS23O95084 383 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 CFIP05156 583 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PPIFP30405 207 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 IL6STP40189 918 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 GCLCP48506 637 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PXNP49023 591 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 CPT1AP50416 773 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 COPAP53621 1224 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 KRT17Q04695 432 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 HYAL1Q12794 435 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 ARHGEF7Q14155 803 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 HLXQ14774 488 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PREPLQ4J6C6 727 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 INO80DQ53TQ3 878 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 HSP90AB4PQ58FF6 505 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 ARL6IP4Q66PJ3 421 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 KIAA1161Q6NSJ0 714 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 MZT2AQ6P582 158 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 FBXO38Q6PIJ6 1188 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 SPATA5Q8NB90 893 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 DENND1AQ8TEH3 1009 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PPM1EQ8WY54 764 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 SARAFQ96BY9 339 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 NEU1Q99519 415 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 AIFM2Q9BRQ8 373 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PPCSQ9HAB8 311 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 NRIP3Q9NQ35 241 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 NECTIN3Q9NQS3 549 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 MID2Q9UJV3 735 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 CDC23Q9UJX2 597 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 CAPN11Q9UMQ6 739 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 MTO1Q9Y2Z2 717 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 NOX1Q9Y5S8 564 aa4.43□□□□□ -1.7
SMCHD1-209ENST00000583441 PRAMEF33A0A0G2JMD5 474 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 KRTAP9-6A8MVA2 160 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 TMEM233B4DJY2 109 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 PRAMEF10O60809 474 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 VPS4BO75351 444 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 A1BGP04217 495 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 GRK6P43250 576 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 ALDH9A1P49189 494 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 RPS7P62081 194 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 HSD11B2P80365 405 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 PUM3Q15397 648 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 ZNF260Q3ZCT1 412 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 PLA1AQ53H76 456 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 TAF2Q6P1X5 1199 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 COLGALT2Q8IYK4 626 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 ANKRD42Q8N9B4 389 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 RAPGEF4Q8WZA2 1011 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 BOD1Q96IK1 185 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 ZNF668Q96K58 619 aaPredicted RBP4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 SNX27Q96L92 541 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 TIMP4Q99727 224 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 TTYH3Q9C0H2 523 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 AGO4Q9HCK5 861 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 CTTNBP2NLQ9P2B4 639 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 HSFX1Q9UBD0 423 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 SLC39A10Q9ULF5 831 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 MAN2B2Q9Y2E5 1009 aa4.42□□□□□ -1.7
SMCHD1-209ENST00000583441 BTBD3Q9Y2F9 522 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms