RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 FUKQ8N0W3 1084 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 SCAMP5Q8TAC9 235 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 EEF2KMTQ96G04 330 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 ZC3H10Q96K80 434 aaKnown RBP21.72■■□□□ 1.07
SHMT1-209ENST00000582653 MMRN2Q9H8L6 949 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 EBF1Q9UH73 591 aa21.72■■□□□ 1.07
SHMT1-209ENST00000582653 CHORDC1Q9UHD1 332 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-209ENST00000582653 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.71■■□□□ 1.07
SHMT1-209ENST00000582653 SLC9A3R1O14745 358 aaPredicted RBP21.71■■□□□ 1.07
SHMT1-209ENST00000582653 SLC30A4O14863 429 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 MAPK13O15264 365 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 CCDC192P0DO97 292 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 P4HA1P13674 534 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 ASPAP45381 313 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 ADAM9Q13443 819 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 PNOCQ13519 176 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 FILIP1Q7Z7B0 1213 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 KBTBD6Q86V97 674 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 FAM186BQ8IYM0 893 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 C12orf29Q8N999 325 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 TAS1R2Q8TE23 839 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 OVCA2Q8WZ82 227 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 TAF4BQ92750 862 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 IL37Q9NZH6 218 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 CPQQ9Y646 472 aa21.71■■□□□ 1.07
SHMT1-209ENST00000582653 K7EQS6 105 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 TNFRSF10BO14763 440 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 AP1G2O75843 785 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 BEST1O76090 585 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 PSMC2P35998 433 aaKnown RBP21.7■■□□□ 1.06
SHMT1-209ENST00000582653 OPRD1P41143 372 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 DMC1Q14565 340 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 SNX30Q5VWJ9 437 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 INTS8Q75QN2 995 aaKnown RBP21.7■■□□□ 1.06
SHMT1-209ENST00000582653 CRYBG2Q8N1P7 616 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 PDZD8Q8NEN9 1154 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 SLC2A14Q8TDB8 520 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 FBXO32Q969P5 355 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 ACDQ96AP0 544 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 SMARCD1Q96GM5 515 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 SMOQ99835 787 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 ARRDC1-AS1Q9H2J1 176 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 APOBEC3GQ9HC16 384 aaKnown RBP21.7■■□□□ 1.06
SHMT1-209ENST00000582653 DMAP1Q9NPF5 467 aaPredicted RBP21.7■■□□□ 1.06
SHMT1-209ENST00000582653 KRT82Q9NSB4 513 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 FAM49BQ9NUQ9 324 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 COMMD8Q9NX08 183 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 ATP8B3O60423 1300 aa21.7■■□□□ 1.06
SHMT1-209ENST00000582653 ATG2BQ96BY7 2078 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 ZNF806P0C7X5 589 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 KRT13P13646 458 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 RPL13P26373 211 aaKnown RBP21.69■■□□□ 1.06
SHMT1-209ENST00000582653 SLC5A3P53794 718 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 GAB4Q2WGN9 574 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 ZCWPW2Q504Y3 356 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 FMR1NBQ8N0W7 255 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-209ENST00000582653 ZMIZ2Q8NF64 920 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 HHIPQ96QV1 700 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 TWNKQ96RR1 684 aa21.69■■□□□ 1.06
SHMT1-209ENST00000582653 GDF9O60383 454 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 EPN2O95208 641 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 APBB3O95704 486 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 MBL2P11226 248 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-209ENST00000582653 MAP3K7CLP57077 242 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 BECN1Q14457 450 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 DHCR24Q15392 516 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 RHBDF2Q6PJF5 856 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 UNC93AQ86WB7 457 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 DDX42Q86XP3 938 aaKnown RBP eCLIP21.68■■□□□ 1.06
SHMT1-209ENST00000582653 USP33Q8TEY7 942 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 ERCC4Q92889 916 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-209ENST00000582653 CFAP97Q9P2B7 532 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 TBC1D14Q9P2M4 693 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 PCDHGA5Q9Y5G8 931 aa21.68■■□□□ 1.06
SHMT1-209ENST00000582653 HELZP42694 1942 aaKnown RBP21.68■■□□□ 1.06
SHMT1-209ENST00000582653 A0A0A0MRY4 1105 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 E2F8A0AVK6 867 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 FAM92AA1XBS5 289 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 COCHO43405 550 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 CYP17A1P05093 508 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 ADORA2BP29275 332 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 EIF2DP41214 584 aaKnown RBP21.67■■□□□ 1.06
SHMT1-209ENST00000582653 PGFP49763 221 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 PLK5Q496M5 336 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 HECTD3Q5T447 861 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 DUSP15Q9H1R2 295 aaPredicted RBP21.67■■□□□ 1.06
SHMT1-209ENST00000582653 CCSER2Q9H7U1 834 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 GMIPQ9P107 970 aa21.67■■□□□ 1.06
SHMT1-209ENST00000582653 GOLGA6L4A6NEF3 574 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 ANTXRLA6NF34 631 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 CD58P19256 250 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 PRCPP42785 496 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 SLC6A11P48066 632 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 MRPS21P82921 87 aaKnown RBP21.66■■□□□ 1.06
SHMT1-209ENST00000582653 C2orf27AQ580R0 203 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 PLA2G2CQ5R387 149 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 ENGASEQ8NFI3 743 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 WHAMMQ8TF30 809 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 SEMA4DQ92854 862 aa21.66■■□□□ 1.06
SHMT1-209ENST00000582653 PNKPQ96T60 521 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms