RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 GIPC2Q8TF65 315 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 NAPGQ99747 312 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-207ENST00000580002 OXCT2Q9BYC2 517 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-207ENST00000580002 ADAM33Q9BZ11 813 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 RXFP1Q9HBX9 757 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP26.36■■□□□ 1.81
SHMT1-207ENST00000580002 YJEFN3A6XGL0 299 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 E7ENQ6 273 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 SRGAP2O75044 1071 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 MAGEA11P43364 429 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 RAB33AQ14088 237 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 VSTM1Q6UX27 236 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 ARFGAP1Q8N6T3 406 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 RXFP2Q8WXD0 754 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 TGS1Q96RS0 853 aaKnown RBP26.36■■□□□ 1.81
SHMT1-207ENST00000580002 PLVAPQ9BX97 442 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 USTQ9Y2C2 406 aa26.36■■□□□ 1.81
SHMT1-207ENST00000580002 ATF6P18850 670 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 DAOAP59103 153 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 C8orf48Q96LL4 319 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 ENTPD7Q9NQZ7 604 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 AFF4Q9UHB7 1163 aaKnown RBP26.35■■□□□ 1.81
SHMT1-207ENST00000580002 CTAGE9A4FU28 777 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 KIF2AO00139 706 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-207ENST00000580002 PROSCO94903 275 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 MARCKSL1P49006 195 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 ERVK-21P61565 698 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 C15orf59Q2T9L4 293 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-207ENST00000580002 C11orf63Q6NUN7 778 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 PEX26Q7Z412 305 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 KIF18AQ8NI77 898 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 CFAP57Q96MR6 1250 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 KLHL5Q96PQ7 755 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 FNIP2Q9P278 1114 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 JRKLQ9Y4A0 524 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 USP3Q9Y6I4 520 aa26.35■■□□□ 1.81
SHMT1-207ENST00000580002 EPOPA6NHQ4 379 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 C2CD4BA6NLJ0 364 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 ZBED1O96006 694 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 FYNP06241 537 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 ATF2P15336 505 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 CXCR5P32302 372 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 PITX1P78337 314 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-207ENST00000580002 SLC26A9Q7LBE3 791 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 KRT35Q92764 455 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 FAM149B1Q96BN6 582 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 CYP4F11Q9HBI6 524 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 LZTS1Q9Y250 596 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 RWDD3Q9Y3V2 267 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 PDE4DIPQ5VU43 2346 aa26.34■■□□□ 1.81
SHMT1-207ENST00000580002 C2orf71A6NGG8 1288 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 PDGFRAP16234 1089 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 PSMA2P25787 234 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 TAS2R40P59535 323 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 CCDC14Q49A88 953 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 MRPL43Q8N983 215 aaKnown RBP26.33■■□□□ 1.81
SHMT1-207ENST00000580002 MICAL1Q8TDZ2 1067 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 PNPLA8Q9NP80 782 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 TLR9Q9NR96 1032 aa26.33■■□□□ 1.81
SHMT1-207ENST00000580002 TRIM66O15016 1216 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 SNX16P57768 344 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 SMARCB1Q12824 385 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 SYPL2Q5VXT5 272 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 PM20D1Q6GTS8 502 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 ZDHHC17Q8IUH5 632 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 DEFB106AQ8N104 65 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 CNGB3Q9NQW8 809 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 CALCOCO1Q9P1Z2 691 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 IP6K2Q9UHH9 426 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 AMFRQ9UKV5 643 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 NAALADL1Q9UQQ1 740 aa26.33■■□□□ 1.8
SHMT1-207ENST00000580002 ZNF185O15231 689 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 DDX3YO15523 660 aaKnown RBP26.32■■□□□ 1.8
SHMT1-207ENST00000580002 TGM5O43548 720 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 URI1O94763 535 aaPredicted RBP26.32■■□□□ 1.8
SHMT1-207ENST00000580002 AMPD2Q01433 879 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 GPM6BQ13491 265 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 TXNRD3NBQ6F5E7 133 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 NUP93Q8N1F7 819 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 C2orf15Q8WU43 125 aaKnown RBP26.32■■□□□ 1.8
SHMT1-207ENST00000580002 ARNTL2Q8WYA1 636 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 CD101Q93033 1021 aa26.32■■□□□ 1.8
SHMT1-207ENST00000580002 C11orf84Q9BUA3 381 aaPredicted RBP26.32■■□□□ 1.8
SHMT1-207ENST00000580002 RFXAPO00287 272 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 FSCN2O14926 492 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 TUBB4AP04350 444 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 RB1P06400 928 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 GPD1P21695 349 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 ATP11AP98196 1134 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 PAPD7Q5XG87 772 aaKnown RBP26.31■■□□□ 1.8
SHMT1-207ENST00000580002 TPGS2Q68CL5 300 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 CHRDL2Q6WN34 429 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 SCD5Q86SK9 330 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 SYCE1Q8N0S2 351 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 EDEM1Q92611 657 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 HES6Q96HZ4 224 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 NMUR1Q9HB89 426 aa26.31■■□□□ 1.8
SHMT1-207ENST00000580002 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP26.31■■□□□ 1.8
SHMT1-207ENST00000580002 BMP8BP34820 402 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 ATXN1P54253 815 aaKnown RBP26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms