RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PNPLA8Q9NP80 782 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 SMPD4Q9NXE4 827 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 MYO16Q9Y6X6 1858 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 HHLA1C9JL84 531 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 P4HA2O15460 535 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 CCDC192P0DO97 292 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 MBL2P11226 248 aaPredicted RBP25.25■■□□□ 1.63
SHMT1-206ENST00000579558 CHRNB1P11230 501 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 NBL1P41271 181 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 ZXDBP98169 803 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 PON2Q15165 354 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 HECTD3Q5T447 861 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 SNX30Q5VWJ9 437 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 CPA6Q8N4T0 437 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 MLKLQ8NB16 471 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 DUSP16Q9BY84 665 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 NUP62CLQ9H1M0 184 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 LMBRD1Q9NUN5 540 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 UTP18Q9Y5J1 556 aaKnown RBP eCLIP25.25■■□□□ 1.63
SHMT1-206ENST00000579558 CACNA1IQ9P0X4 2223 aa25.25■■□□□ 1.63
SHMT1-206ENST00000579558 OTOL1A6NHN0 477 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-206ENST00000579558 ZDHHC11BP0C7U3 371 aa25.24■■□□□ 1.63
SHMT1-206ENST00000579558 SP9P0CG40 484 aa25.24■■□□□ 1.63
SHMT1-206ENST00000579558 ACO1P21399 889 aaKnown RBP25.24■■□□□ 1.63
SHMT1-206ENST00000579558 KCNH2Q12809 1159 aa25.24■■□□□ 1.63
SHMT1-206ENST00000579558 LRRC32Q14392 662 aa25.24■■□□□ 1.63
SHMT1-206ENST00000579558 MAML2Q8IZL2 1156 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-206ENST00000579558 ATP2A3Q93084 1043 aa25.24■■□□□ 1.63
SHMT1-206ENST00000579558 GBP4Q96PP9 640 aa25.24■■□□□ 1.63
SHMT1-206ENST00000579558 COCHO43405 550 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 AFPP02771 609 aaKnown RBP25.23■■□□□ 1.63
SHMT1-206ENST00000579558 TUBP50607 506 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 MTAPQ13126 283 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 EML3Q32P44 896 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 ARHGAP17Q68EM7 881 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 DDX42Q86XP3 938 aaKnown RBP eCLIP25.23■■□□□ 1.63
SHMT1-206ENST00000579558 IER2Q9BTL4 223 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 CCSER2Q9H7U1 834 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 ECT2Q9H8V3 914 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 TLR8Q9NR97 1041 aaKnown RBP25.23■■□□□ 1.63
SHMT1-206ENST00000579558 RBM12Q9NTZ6 932 aaKnown RBP25.23■■□□□ 1.63
SHMT1-206ENST00000579558 SCML2Q9UQR0 700 aa25.23■■□□□ 1.63
SHMT1-206ENST00000579558 AMPD2Q01433 879 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 DGKKQ5KSL6 1271 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 CREBRFQ8IUR6 639 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 PPM1KQ8N3J5 372 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 UBR7Q8N806 425 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 LMO3Q8TAP4 145 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 CNOT6LQ96LI5 555 aaKnown RBP25.22■■□□□ 1.63
SHMT1-206ENST00000579558 MED15Q96RN5 788 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 NACA2Q9H009 215 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 LINC00597Q9H2U6 94 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 CFAP97Q9P2B7 532 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 FBXO4Q9UKT5 387 aa25.22■■□□□ 1.63
SHMT1-206ENST00000579558 PROB1E7EW31 1015 aa25.21■■□□□ 1.63
SHMT1-206ENST00000579558 CYP26A1O43174 497 aa25.21■■□□□ 1.63
SHMT1-206ENST00000579558 CD19P15391 556 aa25.21■■□□□ 1.63
SHMT1-206ENST00000579558 PGFP49763 221 aa25.21■■□□□ 1.63
SHMT1-206ENST00000579558 CSTF1Q05048 431 aaKnown RBP25.21■■□□□ 1.63
SHMT1-206ENST00000579558 SGO2Q562F6 1265 aa25.21■■□□□ 1.63
SHMT1-206ENST00000579558 TLR5O60602 858 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 NFATC1O95644 943 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 GJA4P35212 333 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 KIF11P52732 1056 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 SLC8A3P57103 927 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 NR1H3Q13133 447 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 GOLGA7BQ2TAP0 167 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 KIAA1958Q8N8K9 716 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 ANKRD52Q8NB46 1076 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 EHBP1Q8NDI1 1231 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 CHFRQ96EP1 664 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 IPO9Q96P70 1041 aaKnown RBP25.2■■□□□ 1.62
SHMT1-206ENST00000579558 PCDHB4Q9Y5E5 795 aa25.2■■□□□ 1.62
SHMT1-206ENST00000579558 USP34Q70CQ2 3546 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 SLC9A3R1O14745 358 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-206ENST00000579558 SCAMP3O14828 347 aaKnown RBP25.19■■□□□ 1.62
SHMT1-206ENST00000579558 GRSF1Q12849 480 aaKnown RBP eCLIP25.19■■□□□ 1.62
SHMT1-206ENST00000579558 CCINQ13939 588 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 TPD52L1Q16890 204 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-206ENST00000579558 DPCR1Q3MIW9 517 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 TMEM270Q6UE05 265 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 ARHGEF19Q8IW93 802 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 KAT5Q92993 513 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 ZFRQ96KR1 1074 aaKnown RBP25.19■■□□□ 1.62
SHMT1-206ENST00000579558 INTS2Q9H0H0 1204 aaKnown RBP25.19■■□□□ 1.62
SHMT1-206ENST00000579558 PRMT8Q9NR22 394 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-206ENST00000579558 TSPAN16Q9UKR8 245 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 R4GN57 208 aa25.19■■□□□ 1.62
SHMT1-206ENST00000579558 A0A1W2PQH9 124 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 TRDMT1O14717 391 aaKnown RBP25.18■■□□□ 1.62
SHMT1-206ENST00000579558 VDRP11473 427 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 GAS6Q14393 721 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 ZNF528Q3MIS6 628 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 TMEM196Q5HYL7 178 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 ZC3H14Q6PJT7 736 aaKnown RBP25.18■■□□□ 1.62
SHMT1-206ENST00000579558 Q6ZS52 159 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 RRAGAQ7L523 313 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 CCDC186Q7Z3E2 898 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 TTC30AQ86WT1 665 aa25.18■■□□□ 1.62
SHMT1-206ENST00000579558 EXOC4Q96A65 974 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms