RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ATP8B3O60423 1300 aa10.78□□□□□ -0.68
SS18-210ENST00000578700 UQCRHLA0A096LP55 91 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 SHISA7A6NL88 538 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 CHURC1-FNTBB4DL54 471 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 NRG2O14511 850 aaPredicted RBP10.77□□□□□ -0.69
SS18-210ENST00000578700 ABLIM1O14639 778 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 ZNF197O14709 1029 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 ZZEF1O43149 2961 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 TRAPPC3O43617 180 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 FAM189A1O60320 539 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 GDF9O60383 454 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 SLU7O95391 586 aaKnown RBP10.77□□□□□ -0.69
SS18-210ENST00000578700 UQCRHP07919 91 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 RETP07949 1114 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 MYL4P12829 197 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 GJA1P17302 382 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 VIPR2P41587 438 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 GRM5P41594 1212 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 CXCL12P48061 93 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 FNTBP49356 437 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 CCR3P51677 355 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 TUBB4BP68371 445 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 SATB1Q01826 763 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 DMWDQ09019 674 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 CUL2Q13617 745 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 ZNF699Q32M78 642 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 CYP4A22Q5TCH4 519 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 LAIR1Q6GTX8 287 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 PPP1R2P3Q6NXS1 205 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 ANKS3Q6ZW76 656 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 PDZD4Q76G19 769 aaPredicted RBP10.77□□□□□ -0.69
SS18-210ENST00000578700 ZNF677Q86XU0 584 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 HS6ST3Q8IZP7 471 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 NETO1Q8TDF5 533 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 DNASE1L2Q92874 299 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 IRF7Q92985 503 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 DDX27Q96GQ7 796 aaKnown RBP10.77□□□□□ -0.69
SS18-210ENST00000578700 ZSWIM3Q96MP5 696 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 WDR24Q96S15 920 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 CHRDQ9H2X0 955 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 ZNF334Q9HCZ1 680 aaPredicted RBP10.77□□□□□ -0.69
SS18-210ENST00000578700 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.77□□□□□ -0.693e-16■■■■■ 317.3
SS18-210ENST00000578700 SEMA4GQ9NTN9 838 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 AJAP1Q9UKB5 411 aaPredicted RBP10.77□□□□□ -0.69
SS18-210ENST00000578700 PIAS3Q9Y6X2 628 aa10.77□□□□□ -0.69
SS18-210ENST00000578700 ANO9A1A5B4 782 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 WDR27A2RRH5 827 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 BTNL10A8MVZ5 291 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 SLC30A4O14863 429 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 ZNF263O14978 683 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 HRO43593 1189 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 SEC24AO95486 1093 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 KRT19P08727 400 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 POU2F2P09086 479 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 PNMA6AP0CW24 399 aaPredicted RBP10.76□□□□□ -0.69
SS18-210ENST00000578700 CXCL8P10145 99 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 ATICP31939 592 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 CCR2P41597 374 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 NOP2P46087 812 aaKnown RBP10.76□□□□□ -0.69
SS18-210ENST00000578700 NOP14P78316 857 aaKnown RBP10.76□□□□□ -0.69
SS18-210ENST00000578700 ROR1Q01973 937 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 TMEM132DQ14C87 1099 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 CD300LGQ6UXG3 332 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 VITQ6UXI7 678 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 PRR23CQ6ZRP0 262 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 CEP68Q76N32 757 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 ELMOD1Q8N336 334 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 OR5B17Q8NGF7 314 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 ZNF461Q8TAF7 563 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 TTC8Q8TAM2 541 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 FAXDC2Q96IV6 333 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 ZNF512Q96ME7 567 aaPredicted RBP10.76□□□□□ -0.69
SS18-210ENST00000578700 TSPAN18Q96SJ8 248 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 PI4K2AQ9BTU6 479 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 MTMR12Q9C0I1 747 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 GPR88Q9GZN0 384 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 DNAI2Q9GZS0 605 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 NIF3L1Q9GZT8 377 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 LACRTQ9GZZ8 138 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 SLITRK6Q9H5Y7 841 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 PLEKHA5Q9HAU0 1116 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 RBM12Q9NTZ6 932 aaKnown RBP10.76□□□□□ -0.69
SS18-210ENST00000578700 RALYQ9UKM9 306 aaKnown RBP10.76□□□□□ -0.69
SS18-210ENST00000578700 DERAQ9Y315 318 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 JRKLQ9Y4A0 524 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 PCDHB4Q9Y5E5 795 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 BACE2Q9Y5Z0 518 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 PDCD11Q14690 1871 aaKnown RBP10.76□□□□□ -0.69
SS18-210ENST00000578700 SPAG17Q6Q759 2223 aa10.76□□□□□ -0.69
SS18-210ENST00000578700 ASPMQ8IZT6 3477 aa10.75□□□□□ -0.69
SS18-210ENST00000578700 LACTBL1A8MY62 500 aa10.75□□□□□ -0.69
SS18-210ENST00000578700 DDX3XO00571 662 aaKnown RBP eCLIP10.75□□□□□ -0.691e-15■■■□□ 17.7
SS18-210ENST00000578700 AXIN1O15169 862 aa10.75□□□□□ -0.69
SS18-210ENST00000578700 CYP26A1O43174 497 aa10.75□□□□□ -0.69
SS18-210ENST00000578700 XPOTO43592 962 aaKnown RBP10.75□□□□□ -0.69
SS18-210ENST00000578700 VNN1O95497 513 aa10.75□□□□□ -0.69
SS18-210ENST00000578700 ASS1P00966 412 aaKnown RBP10.75□□□□□ -0.69
SS18-210ENST00000578700 TDGF1P13385 188 aa10.75□□□□□ -0.69
SS18-210ENST00000578700 CYP11B1P15538 503 aa10.75□□□□□ -0.69
SS18-210ENST00000578700 PSMC3P17980 439 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms