RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 ZXDBP98169 803 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 PDE4CQ08493 712 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 KRT31Q15323 416 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 MLF2Q15773 248 aaPredicted RBP20.39■□□□□ 0.85
SS18-208ENST00000577751 GOLGA7BQ2TAP0 167 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 ANO6Q4KMQ2 910 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 PIGZQ86VD9 579 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 SUGP1Q8IWZ8 645 aaKnown RBP20.39■□□□□ 0.85
SS18-208ENST00000577751 SHC3Q92529 594 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 SHDQ96IW2 340 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 BPIFA3Q9BQP9 254 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 DDX23Q9BUQ8 820 aaKnown RBP20.39■□□□□ 0.85
SS18-208ENST00000577751 MFSD1Q9H3U5 465 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 TAB2Q9NYJ8 693 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 GMIPQ9P107 970 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 HESX1Q9UBX0 185 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 ZNF318Q5VUA4 2279 aa20.39■□□□□ 0.85
SS18-208ENST00000577751 SHISA7A6NL88 538 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 BECN2A8MW95 431 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 XPO1O14980 1071 aaKnown RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 AVPR2P30518 371 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 MLLT6P55198 1093 aaPredicted RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 SLC8A3P57103 927 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 PLCB2Q00722 1185 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 BST2Q10589 180 aaKnown RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 USP4Q13107 963 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 STILQ15468 1287 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 ZNF77Q15935 545 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 ASTLQ6HA08 431 aaPredicted RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 CCDC186Q7Z3E2 898 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 UBA3Q8TBC4 463 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 ZFYVE19Q96K21 471 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 FAM83CQ9BQN1 747 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 NAT10Q9H0A0 1025 aaKnown RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 VPS16Q9H269 839 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 TBC1D17Q9HA65 648 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 TLR8Q9NR97 1041 aaKnown RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 HEBP1Q9NRV9 189 aa20.38■□□□□ 0.85
SS18-208ENST00000577751 THG1LQ9NWX6 298 aaKnown RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 LIMA1Q9UHB6 759 aaKnown RBP20.38■□□□□ 0.85
SS18-208ENST00000577751 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.38■□□□□ 0.85
SS18-208ENST00000577751 LRRC10BA6NIK2 292 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 TULP2O00295 520 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 KRT5P13647 590 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 AOC1P19801 751 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 BRD2P25440 801 aaKnown RBP20.37■□□□□ 0.85
SS18-208ENST00000577751 PLA2G4AP47712 749 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 VCPP55072 806 aaKnown RBP20.37■□□□□ 0.85
SS18-208ENST00000577751 HECTD3Q5T447 861 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 FLCNQ8NFG4 579 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 GKN1Q9NS71 199 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 DNAJC12Q9UKB3 198 aa20.37■□□□□ 0.85
SS18-208ENST00000577751 AJAP1Q9UKB5 411 aaPredicted RBP20.37■□□□□ 0.85
SS18-208ENST00000577751 CYP26A1O43174 497 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 COCHO43405 550 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 CALCAP01258 141 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 SETSIPP0DME0 302 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 GLULP15104 373 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 MTF1Q14872 753 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 ARHGAP44Q17R89 818 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 PM20D1Q6GTS8 502 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 ZNF276Q8N554 614 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 AOPEPQ8N6M6 819 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 KIAA1958Q8N8K9 716 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 TMEM105Q8N8V8 129 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 SH3RF2Q8TEC5 729 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 SLC35F5Q8WV83 523 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 KCTD13Q8WZ19 329 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 CCSER2Q9H7U1 834 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 NMUR1Q9HB89 426 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 CYLDQ9NQC7 956 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 OSER1Q9NX31 292 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 ZDBF2Q9HCK1 2354 aa20.36■□□□□ 0.85
SS18-208ENST00000577751 KANSL1LA0AUZ9 987 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 PES1O00541 588 aaKnown RBP20.35■□□□□ 0.85
SS18-208ENST00000577751 PI15O43692 258 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 COL9A1P20849 921 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 PSEN1P49768 467 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 KLHDC7AQ5VTJ3 777 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 TPRG1Q6ZUI0 275 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 APTXQ7Z2E3 356 aaKnown RBP20.35■□□□□ 0.85
SS18-208ENST00000577751 SCD5Q86SK9 330 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 DHX40Q8IX18 779 aaKnown RBP20.35■□□□□ 0.85
SS18-208ENST00000577751 CSGALNACT1Q8TDX6 532 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 ZFRQ96KR1 1074 aaKnown RBP20.35■□□□□ 0.85
SS18-208ENST00000577751 GTSE1Q9NYZ3 720 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 CPQQ9Y646 472 aa20.35■□□□□ 0.85
SS18-208ENST00000577751 A0A1W2PQH9 124 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 SYCE3A1L190 88 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 LEFTY2O00292 366 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 TLR5O60602 858 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 TPM2P07951 284 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 TKTL1P51854 596 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 COPB1P53618 953 aaKnown RBP20.34■□□□□ 0.85
SS18-208ENST00000577751 TNK2Q07912 1038 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 MEA1Q16626 185 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 SKOR2Q2VWA4 1001 aaPredicted RBP20.34■□□□□ 0.85
SS18-208ENST00000577751 CC2D1AQ6P1N0 951 aaPredicted RBP20.34■□□□□ 0.85
SS18-208ENST00000577751 ANKRD20A12PQ8NF67 263 aa20.34■□□□□ 0.85
SS18-208ENST00000577751 ZNF606Q8WXB4 792 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms