RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FBXO36Q8NEA4 188 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 MS4A4AQ96JQ5 239 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 ZMAT2Q96NC0 199 aaKnown RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 RNF157Q96PX1 679 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 MRPL45Q9BRJ2 306 aaKnown RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 DHRS4Q9BTZ2 278 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 SLC4A5Q9BY07 1137 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 ACSS3Q9H6R3 686 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 MORF4L1Q9UBU8 362 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 A0A1W2PPM1 405 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 BTBD19C9JJ37 291 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 UBOX5O94941 541 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 SETSIPP0DME0 302 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 IL4RP24394 825 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 RPA3P35244 121 aaPredicted RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 NRLP54845 237 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 BASP1P80723 227 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 RNASELQ05823 741 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 PDK2Q15119 407 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 ZBTB6Q15916 424 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 CDO1Q16878 200 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 FAM133BQ5BKY9 247 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 ZC3H12AQ5D1E8 599 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 ICE2Q659A1 982 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 ADGRD1Q6QNK2 874 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 TMEM110Q86TL2 294 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 ACOT1Q86TX2 421 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 MAP7D3Q8IWC1 876 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 C4orf33Q8N1A6 199 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 TAB3Q8N5C8 712 aaPredicted RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 GBP7Q8N8V2 638 aaPredicted RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 SLC35F5Q8WV83 523 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 TEKT4Q8WW24 435 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 USP6NLQ92738 828 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 KHSRPQ92945 711 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS53-220ENST00000576149 MRRFQ96E11 262 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 SNX27Q96L92 541 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 TSPAN18Q96SJ8 248 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 PAIP2Q9BPZ3 127 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 ADAMTS10Q9H324 1103 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 SPON1Q9HCB6 807 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 SSU72Q9NP77 194 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 SNTG2Q9NY99 539 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 NME7Q9Y5B8 376 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 SNX9Q9Y5X1 595 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 PLXNB2O15031 1838 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 PPEF2O14830 753 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 YBX3P16989 372 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS53-220ENST00000576149 GCLCP48506 637 aaPredicted RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 ATP11AP98196 1134 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 SLC6A3Q01959 620 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 KRT81Q14533 505 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 EFTUD2Q15029 972 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS53-220ENST00000576149 DGKDQ16760 1214 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 KLHL38Q2WGJ6 581 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 BBS9Q3SYG4 887 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 SLC27A1Q6PCB7 646 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 DPP9Q86TI2 863 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 ZC3H18Q86VM9 953 aaKnown RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 PALM2Q8IXS6 379 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 LRRC52Q8N7C0 313 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 PLD5Q8N7P1 536 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 OR6J1Q8NGC5 347 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.52□□□□□ -0.73
VPS53-220ENST00000576149 FBF1Q8TES7 1133 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 MAML3Q96JK9 1138 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 PITPNM3Q9BZ71 974 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 SETD4Q9NVD3 440 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 GGT7Q9UJ14 662 aa10.52□□□□□ -0.73
VPS53-220ENST00000576149 RRN3P2A6NIE6 340 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 GABBR2O75899 941 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 CA4P22748 312 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 CBLBQ13191 982 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 ACVR2BQ13705 512 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 KCNJ11Q14654 390 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 PDK4Q16654 411 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 RNF43Q68DV7 783 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 C1orf228Q6PIY5 440 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 GPR142Q7Z601 462 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 VSIG1Q86XK7 387 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 PARP9Q8IXQ6 854 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 MZB1Q8WU39 189 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 FAM172AQ8WUF8 416 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 TBCBQ99426 244 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 PAFAH2Q99487 392 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 GCOM2Q9BZD3 368 aaPredicted RBP10.51□□□□□ -0.73
VPS53-220ENST00000576149 ABHD16BQ9H3Z7 469 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 USP29Q9HBJ7 922 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 RXFP1Q9HBX9 757 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 NGRNQ9NPE2 291 aaKnown RBP10.51□□□□□ -0.73
VPS53-220ENST00000576149 FAM49BQ9NUQ9 324 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 KLHL14Q9P2G3 628 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 TUBGCP4Q9UGJ1 667 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 GRID1Q9ULK0 1009 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 STARD13Q9Y3M8 1113 aa10.51□□□□□ -0.73
VPS53-220ENST00000576149 CCL15-CCL14A0A0B4J2E2 113 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CFAP73A6NFT4 308 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 H7C0C1 242 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 CHADO15335 359 aa10.5□□□□□ -0.73
VPS53-220ENST00000576149 PAPSS1O43252 624 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms