RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 ZNF513Q8N8E2 541 aaPredicted RBP18.69■□□□□ 0.58
CCDC40-211ENST00000574099 HPDLQ96IR7 371 aa18.69■□□□□ 0.58
CCDC40-211ENST00000574099 ANKRD36BP1Q96IX9 119 aa18.69■□□□□ 0.58
CCDC40-211ENST00000574099 KIF2CQ99661 725 aa18.69■□□□□ 0.58
CCDC40-211ENST00000574099 TBC1D3BA6NDS4 549 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 LDHAP00338 332 aaKnown RBP18.68■□□□□ 0.58
CCDC40-211ENST00000574099 HOXB2P14652 356 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 GJB2P29033 226 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 TNFRSF4P43489 277 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 CACNA2D1P54289 1103 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 MAPRE1Q15691 268 aaKnown RBP18.68■□□□□ 0.58
CCDC40-211ENST00000574099 SLC36A4Q6YBV0 504 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 HS2ST1Q7LGA3 356 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 SPRYD3Q8NCJ5 442 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 OR5B17Q8NGF7 314 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 MMS19Q96T76 1030 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 EHD2Q9NZN4 543 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 GPSM3Q9Y4H4 160 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 LOC400499M0QZD8 3231 aa18.68■□□□□ 0.58
CCDC40-211ENST00000574099 IGHV1OR15-9A0A0B4J2B8 117 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 ARHGAP33O14559 1287 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 SH3BP5O60239 455 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 CAPNS1P04632 268 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 GARTP22102 1010 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 NOP14P78316 857 aaKnown RBP18.67■□□□□ 0.58
CCDC40-211ENST00000574099 COL28A1Q2UY09 1125 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 C10orf76Q5T2E6 689 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 TDRD10Q5VZ19 366 aaKnown RBP18.67■□□□□ 0.58
CCDC40-211ENST00000574099 USP49Q70CQ1 688 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 DPH6Q7L8W6 267 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 SLC41A1Q8IVJ1 513 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 PNPLA1Q8N8W4 532 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 MYCBPAPQ8TBZ2 947 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 EPSTI1Q96J88 318 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 HSPA12BQ96MM6 686 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 SLITRK1Q96PX8 696 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 MRPL45Q9BRJ2 306 aaKnown RBP18.67■□□□□ 0.58
CCDC40-211ENST00000574099 FGFBP2Q9BYJ0 223 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 TMEM30AQ9NV96 361 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 INTS13Q9NVM9 706 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 CYP8B1Q9UNU6 501 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 NME7Q9Y5B8 376 aa18.67■□□□□ 0.58
CCDC40-211ENST00000574099 A0A0A0MRY4 1105 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 FAM221BA6H8Z2 402 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 TRIM24O15164 1050 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 TULP3O75386 442 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 TNNC2P02585 160 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 WARSP23381 471 aaKnown RBP18.66■□□□□ 0.58
CCDC40-211ENST00000574099 PPP3CCP48454 512 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 GAD2Q05329 585 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 TRIP6Q15654 476 aaKnown RBP18.66■□□□□ 0.58
CCDC40-211ENST00000574099 BTBD8Q5XKL5 378 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 LIMS2Q7Z4I7 341 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 PDZD3Q86UT5 571 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 DDX42Q86XP3 938 aaKnown RBP eCLIP18.66■□□□□ 0.58
CCDC40-211ENST00000574099 MIB1Q86YT6 1006 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 ETFBKMTQ8IXQ9 262 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 KIAA1958Q8N8K9 716 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 TRIML1Q8N9V2 468 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 CEP295NLQ96MC4 621 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 ZNF518BQ9C0D4 1074 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 CD93Q9NPY3 652 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 TBC1D14Q9P2M4 693 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 SEL1LQ9UBV2 794 aa18.66■□□□□ 0.58
CCDC40-211ENST00000574099 SYPP08247 313 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 FTH1P19P0C7X4 201 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 IRF1P10914 325 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 IDEP14735 1019 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 GAP43P17677 238 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 SF3A1Q15459 793 aaKnown RBP18.65■□□□□ 0.58
CCDC40-211ENST00000574099 ANO4Q32M45 955 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 PLEKHG6Q3KR16 790 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 SOWAHCQ53LP3 525 aaPredicted RBP18.65■□□□□ 0.58
CCDC40-211ENST00000574099 TRMT11Q7Z4G4 463 aaKnown RBP18.65■□□□□ 0.58
CCDC40-211ENST00000574099 RABEPKQ7Z6M1 372 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 BBS7Q8IWZ6 715 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 RGL4Q8IZJ4 473 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 GPD1LQ8N335 351 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 TERB1Q8NA31 727 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 DNAJC19Q96DA6 116 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 C8orf48Q96LL4 319 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 SNX25Q9H3E2 840 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 DPEP3Q9H4B8 488 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 DNAAF2Q9NVR5 837 aaKnown RBP18.65■□□□□ 0.58
CCDC40-211ENST00000574099 DEC1Q9P2X7 70 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 HCN2Q9UL51 889 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 SH3BP1Q9Y3L3 701 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 PCDHB9Q9Y5E1 797 aa18.65■□□□□ 0.58
CCDC40-211ENST00000574099 PLXNB3Q9ULL4 1909 aa18.64■□□□□ 0.58
CCDC40-211ENST00000574099 E2F8A0AVK6 867 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 CLDN5O00501 218 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 COCHO43405 550 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 PRPF6O94906 941 aaKnown RBP18.64■□□□□ 0.57
CCDC40-211ENST00000574099 BMP15O95972 392 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 NDUFV2P19404 249 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 NTSR1P30989 418 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 HNRNPDQ14103 355 aaKnown RBP18.64■□□□□ 0.57
CCDC40-211ENST00000574099 EGFLAMQ63HQ2 1017 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 OR6B3Q8NGW1 331 aa18.64■□□□□ 0.57
CCDC40-211ENST00000574099 FBXO32Q969P5 355 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms