RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 NFU1Q9UMS0 254 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 PCDHGB4Q9UN71 923 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 ANGEL1Q9UNK9 670 aaKnown RBP2.32□□□□□ -2.04
CHD3-217ENST00000574022 SMG5Q9UPR3 1016 aaKnown RBP2.32□□□□□ -2.04
CHD3-217ENST00000574022 USP22Q9UPT9 525 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 NAALADL1Q9UQQ1 740 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 TMEM5Q9Y2B1 443 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 SNX8Q9Y5X2 465 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 PSAT1Q9Y617 370 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 PIAS3Q9Y6X2 628 aa2.32□□□□□ -2.04
CHD3-217ENST00000574022 FAM90A20PA6NIJ5 464 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 BTBD11A6QL63 1104 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 B5MCH6 92 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 KIF28PB7ZC32 967 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 IQCJ-SCHIP1C9J366 451 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 PEX12O00623 359 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TNPO2O14787 897 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 DCLK1O15075 740 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 HOXA3O43365 443 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 WIPF1O43516 503 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 SRGAP2O75044 1071 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ADAM23O75077 832 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 RPP40O75818 363 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 LARGE1O95461 756 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 MLYCDO95822 493 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 F9P00740 461 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 LMNAP02545 664 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 CLEC3BP05452 202 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ATXN1LP0C7T5 689 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 UBL4AP11441 157 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 LAMP2P13473 410 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 HK1P19367 917 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 KCNA3P22001 575 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 YY1P25490 414 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 CALRP27797 417 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 PRKAR1BP31321 381 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 CTNNA1P35221 906 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 GGT5P36269 586 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 UBA7P41226 1012 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 PXNP49023 591 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 PRKAG1P54619 331 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 LILRA4P59901 499 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 KRT83P78385 493 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ADAM17P78536 824 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 IFI35P80217 286 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 SRSF3P84103 164 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 MC1RQ01726 317 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TBL3Q12788 808 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 SF3A3Q12874 501 aaKnown RBP eCLIP2.31□□□□□ -2.04
CHD3-217ENST00000574022 CHAF1BQ13112 559 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 DCTN2Q13561 401 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 ACVR2BQ13705 512 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 BOP1Q14137 746 aaKnown RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 RASA2Q15283 850 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TBCEQ15813 527 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 BMT2Q1RMZ1 405 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 PTCHD3Q3KNS1 767 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TBRG1Q3YBR2 411 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 NRN1LQ496H8 165 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ZNF484Q5JVG2 852 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 CBWD5Q5RIA9 395 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 HECTD3Q5T447 861 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ATXN7L2Q5T6C5 722 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 AGBL4Q5VU57 503 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FYB2Q5VWT5 728 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 LIPMQ5VYY2 423 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ANKS6Q68DC2 871 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 DGAT2L7PQ6IED9 249 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 SLC22A25Q6T423 547 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 SLC30A10Q6XR72 485 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FAM43BQ6ZT52 329 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 Q6ZUG5 572 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 USP30Q70CQ3 517 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 MED25Q71SY5 747 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 H1FNTQ75WM6 255 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 PXKQ7Z7A4 578 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ZSCAN30Q86W11 494 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 LDHDQ86WU2 507 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 VSIG1Q86XK7 387 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TP53INP2Q8IXH6 220 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TAGAPQ8N103 731 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ADSSL1Q8N142 457 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 GALNT4Q8N4A0 578 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 CHCHD4Q8N4Q1 142 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TTC39CQ8N584 583 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 LINC00482Q8N8I6 264 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FAM71DQ8N9W8 422 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 FSIP1Q8NA03 581 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 AGBL5Q8NDL9 886 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 NUDT10Q8NFP7 164 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 OR14K1Q8NGZ2 314 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ZFP28Q8NHY6 868 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ETNPPLQ8TBG4 499 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ZCCHC10Q8TBK6 192 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 DNAJB14Q8TBM8 379 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D5Q92609 795 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 ZBTB8AQ96BR9 441 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 KTI12Q96EK9 354 aaPredicted RBP2.31□□□□□ -2.04
CHD3-217ENST00000574022 NUDT11Q96G61 164 aa2.31□□□□□ -2.04
CHD3-217ENST00000574022 CALML4Q96GE6 196 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms