RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ZFYVE27Q5T4F4 411 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 WSCD1Q658N2 575 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 OVOS1Q6IE37 1185 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 FAM171BQ6P995 826 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 EMBQ6PCB8 327 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 DRICH1Q6PGQ1 229 aaPredicted RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 CCNI2Q6ZMN8 369 aaPredicted RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 SLC26A9Q7LBE3 791 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 STRADAQ7RTN6 431 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 HDXQ7Z353 690 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 RTN4RL1Q86UN2 441 aaPredicted RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 DNAAF5Q86Y56 855 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 SIX6OS1Q8N1H7 587 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 TMEM199Q8N511 208 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 C12orf29Q8N999 325 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 C12orf50Q8NA57 414 aaPredicted RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 BBOF1Q8ND07 529 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 DBF4BQ8NFT6 615 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 SLC2A14Q8TDB8 520 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 TEKT4Q8WW24 435 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 LPPQ93052 612 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 MS4A14Q96JA4 679 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 LRRC19Q9H756 370 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 GOLGA2P5Q9HBQ8 144 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 FAM114A2Q9NRY5 505 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 TMEM39AQ9NV64 488 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 COMMD8Q9NX08 183 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 EHD2Q9NZN4 543 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 PCYOX1Q9UHG3 505 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 STAP1Q9ULZ2 295 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 PACSIN2Q9UNF0 486 aaPredicted RBP8.36□□□□□ -1.07
VPS39-213ENST00000570062 INPP5FQ9Y2H2 1132 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 FAN1Q9Y2M0 1017 aa8.36□□□□□ -1.07
VPS39-213ENST00000570062 SF3B1O75533 1304 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-213ENST00000570062 C2CD4BA6NLJ0 364 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 E5RJQ4 531 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 GOLGA8SH3BPF8 625 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 TERTO14746 1132 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 PRPSAP2O60256 369 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 NBNO60934 754 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 PHF2O75151 1096 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 BAIAP3O94812 1187 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 GAS8O95995 478 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 AMHP03971 560 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 CLTBP09497 229 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 RHOXF2BP0C7M4 288 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 PYGMP11217 842 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 FGFR1P11362 822 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 ZFXP17010 805 aaPredicted RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 LMO2P25791 158 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 OR1G1P47890 313 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 DNA2P51530 1060 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 INSM1Q01101 510 aaPredicted RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 GUCA2AQ02747 115 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 C2orf54Q08AI8 447 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 FAAP100Q0VG06 881 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 CCNG2Q16589 344 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 INTS6LQ5JSJ4 861 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 ACBD5Q5T8D3 534 aaPredicted RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 SCARA3Q6AZY7 606 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 VSTM1Q6UX27 236 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 BZW1Q7L1Q6 419 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 TTC30AQ86WT1 665 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 COLGALT2Q8IYK4 626 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 FUKQ8N0W3 1084 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 LRRC43Q8N309 656 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 ARHGAP18Q8N392 663 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 NOA1Q8NC60 698 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 ATL2Q8NHH9 583 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 SLCO2A1Q92959 643 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 MAGOHBQ96A72 148 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 SLC9A7Q96T83 725 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 KRT12Q99456 494 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 RHOXF2Q9BQY4 288 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 LRRC1Q9BTT6 524 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 MAK16Q9BXY0 300 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 OSBPL8Q9BZF1 889 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 ANKZF1Q9H8Y5 726 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 CSNK1G1Q9HCP0 422 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 METTL5Q9NRN9 209 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 RBM12Q9NTZ6 932 aaKnown RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 TBC1D13Q9NVG8 400 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-213ENST00000570062 HMGXB4Q9UGU5 601 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-213ENST00000570062 USTQ9Y2C2 406 aa8.35□□□□□ -1.07
VPS39-213ENST00000570062 V9GYY5 206 aaPredicted RBP8.35□□□□□ -1.07
VPS39-213ENST00000570062 TRIM66O15016 1216 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 MDM4O15151 490 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 AP1G2O75843 785 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 TIMP1P01033 207 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 CALCAP01258 141 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 JUNDP17535 347 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 ADORA2BP29275 332 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 NOS2P35228 1153 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 MATKP42679 507 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 ALDH7A1P49419 539 aaKnown RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 EPHB4P54760 987 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 RPL7AP62424 266 aaKnown RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 YWHAZP63104 245 aaKnown RBP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms