RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 HDAC11Q96DB2 347 aa11.84□□□□□ -0.51
CLN3-238ENST00000569430 TUBGCP5Q96RT8 1024 aa11.84□□□□□ -0.51
CLN3-238ENST00000569430 FAM96AQ9H5X1 160 aa11.84□□□□□ -0.51
CLN3-238ENST00000569430 WDR35Q9P2L0 1181 aa11.84□□□□□ -0.51
CLN3-238ENST00000569430 HERC5Q9UII4 1024 aaKnown RBP11.84□□□□□ -0.51
CLN3-238ENST00000569430 ZBBXA8MT70 800 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 SRGAP2BP0DMP2 458 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 DSG3P32926 999 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 MRPS22P82650 360 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 C1QBPQ07021 282 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 PDK3Q15120 406 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 KCTD21Q4G0X4 260 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 IL31Q6EBC2 164 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 PID1Q7Z2X4 250 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 C12orf50Q8NA57 414 aaPredicted RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 MAN1C1Q9NR34 630 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 PAIP2BQ9ULR5 123 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 TCRBV9S1A1TA0A576 114 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 NRLP54845 237 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 PKNOX1P55347 436 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 PPIDQ08752 370 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 SLC5A9Q2M3M2 681 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 N4BP2L1Q5TBK1 243 aaPredicted RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 PDPK2PQ6A1A2 396 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 JADE1Q6IE81 842 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 LRRC8EQ6NSJ5 796 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 APOBEC3HQ6NTF7 200 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 UNC45BQ8IWX7 931 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 CERS5Q8N5B7 392 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 RNF149Q8NC42 400 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 HELQQ8TDG4 1101 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 EXT2Q93063 718 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 GMCL1Q96IK5 515 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 DNAJC1Q96KC8 554 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 EPAS1Q99814 870 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 DCUN1D5Q9BTE7 237 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 ZNF395Q9H8N7 513 aaPredicted RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 CISHQ9NSE2 258 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 DMAC2Q9NW81 257 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 KCNK4Q9NYG8 393 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 NDUFA13Q9P0J0 144 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 MROH7Q68CQ1 1323 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 LYPLA1O75608 230 aaPredicted RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 VAV1P15498 845 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 SPIRE1Q08AE8 756 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 DPYSL3Q14195 570 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 FNBP1LQ5T0N5 605 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 DHDDSQ86SQ9 333 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 SLC7A6OSQ96CW6 309 aaPredicted RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 JPH1Q9HDC5 661 aaPredicted RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 WARS2Q9UGM6 360 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 TRPC5Q9UL62 973 aaPredicted RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 RPL26L1Q9UNX3 145 aaKnown RBP11.83□□□□□ -0.52
CLN3-238ENST00000569430 GJA3Q9Y6H8 435 aa11.83□□□□□ -0.52
CLN3-238ENST00000569430 MYH3P11055 1940 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 A0A0B4J269 797 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 NR3C2P08235 984 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 NELFEP18615 380 aaKnown RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 HDAC4P56524 1084 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 GAD2Q05329 585 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 EML3Q32P44 896 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 SNRNP48Q6IEG0 339 aaKnown RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 POTEAQ6S8J7 498 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 RBM44Q6ZP01 1051 aaKnown RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 ASRGL1Q7L266 308 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 NET1Q7Z628 596 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 RYBPQ8N488 228 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 PSPC1Q8WXF1 523 aaKnown RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 UTP4Q969X6 686 aaKnown RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 SGF29Q96ES7 293 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 NR1H4Q96RI1 486 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 NIF3L1Q9GZT8 377 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 COPS7BQ9H9Q2 264 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 WRAP73Q9P2S5 460 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 C4AP0C0L4 1744 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 C4BP0C0L5 1744 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 CAPN8A6NHC0 703 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 MMP10P09238 476 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 FDX1P10109 184 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 ITGB5P18084 799 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 TPP2P29144 1249 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 SERPINB9P50453 376 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 HADHBP55084 474 aaKnown RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 STX1BP61266 288 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 SPP2Q13103 211 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 TTLL12Q14166 644 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 GSTA3Q16772 222 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 CES3Q6UWW8 571 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 ZBTB46Q86UZ6 589 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 PRMT6Q96LA8 375 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 TIPINQ9BVW5 301 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 CEP41Q9BYV8 373 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 EBF3Q9H4W6 596 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 AKAP10O43572 662 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 RALBP11234 206 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 NPR1P16066 1061 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 TM4SF1P30408 202 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 ABCG1P45844 678 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 RAP1GAPP47736 663 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 SLC1A6P48664 564 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms