RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 IFNAR2P48551 515 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 TUBP50607 506 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 GAS6Q14393 721 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 SYNPOQ8N3V7 929 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 CPA6Q8N4T0 437 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 TTC16Q8NEE8 873 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 TMEM176AQ96HP8 235 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 ARID3AQ99856 593 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 PNPLA8Q9NP80 782 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 KIAA1468Q9P260 1216 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 CTNND2Q9UQB3 1225 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 CPQQ9Y646 472 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 WNT6Q9Y6F9 365 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 R4GN57 208 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 CACNA1IQ9P0X4 2223 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 PIEZO1Q92508 2521 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 FMO5P49326 533 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 CCR3P51677 355 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 RAD23BP54727 409 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 PAK1Q13153 545 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 CCDC40Q4G0X9 1142 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 ZNF394Q53GI3 561 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 TMEM196Q5HYL7 178 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 HECTD3Q5T447 861 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 SPEM1Q8N4L4 309 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 SLC4A11Q8NBS3 891 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 HEXIM2Q96MH2 286 aaKnown RBP21.46■■□□□ 1.03
CLK3-225ENST00000569063 LINC00597Q9H2U6 94 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 RBM12Q9NTZ6 932 aaKnown RBP21.46■■□□□ 1.03
CLK3-225ENST00000569063 GMIPQ9P107 970 aa21.46■■□□□ 1.03
CLK3-225ENST00000569063 HELZP42694 1942 aaKnown RBP21.46■■□□□ 1.03
CLK3-225ENST00000569063 COCHO43405 550 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 MBL2P11226 248 aaPredicted RBP21.45■■□□□ 1.02
CLK3-225ENST00000569063 GJA4P35212 333 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 PPP2R5DQ14738 602 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 CAMK4Q16566 473 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 PPP1R26Q5T8A7 1209 aaPredicted RBP21.45■■□□□ 1.02
CLK3-225ENST00000569063 DDX42Q86XP3 938 aaKnown RBP eCLIP21.45■■□□□ 1.02
CLK3-225ENST00000569063 DUSP16Q9BY84 665 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 FAM126AQ9BYI3 521 aaPredicted RBP21.45■■□□□ 1.02
CLK3-225ENST00000569063 ZSCAN32Q9NX65 697 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 SMPD4Q9NXE4 827 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 SCML2Q9UQR0 700 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 PCDHGA2Q9Y5H1 932 aa21.45■■□□□ 1.02
CLK3-225ENST00000569063 NFATC1O95644 943 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 GNA14O95837 355 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 TDGF1P13385 188 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 CXCL12P48061 93 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 MARSP56192 900 aaKnown RBP21.44■■□□□ 1.02
CLK3-225ENST00000569063 GRSF1Q12849 480 aaKnown RBP eCLIP21.44■■□□□ 1.02
CLK3-225ENST00000569063 NR1H3Q13133 447 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 CUL2Q13617 745 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 FSTL4Q6MZW2 842 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 TSSK4Q6SA08 328 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 GPRIN1Q7Z2K8 1008 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 ZBTB44Q8NCP5 570 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 EXOC4Q96A65 974 aa21.44■■□□□ 1.02
CLK3-225ENST00000569063 TLR8Q9NR97 1041 aaKnown RBP21.44■■□□□ 1.02
CLK3-225ENST00000569063 LMNAP02545 664 aaKnown RBP21.43■■□□□ 1.02
CLK3-225ENST00000569063 TBXAS1P24557 533 aaPredicted RBP21.43■■□□□ 1.02
CLK3-225ENST00000569063 PGFP49763 221 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 GALK1P51570 392 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 STX17P56962 302 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 ARHGAP17Q68EM7 881 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 Q6ZS52 159 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 ADGRG2Q8IZP9 1017 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 ZFRQ96KR1 1074 aaKnown RBP21.43■■□□□ 1.02
CLK3-225ENST00000569063 P2RY13Q9BPV8 354 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 SRRTQ9BXP5 876 aaKnown RBP21.43■■□□□ 1.02
CLK3-225ENST00000569063 CCSER2Q9H7U1 834 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 CFAP97Q9P2B7 532 aa21.43■■□□□ 1.02
CLK3-225ENST00000569063 E2F8A0AVK6 867 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 SLC9A3R1O14745 358 aaPredicted RBP21.42■■□□□ 1.02
CLK3-225ENST00000569063 P4HA2O15460 535 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 LILRB5O75023 590 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 PAPSS2O95340 614 aaPredicted RBP21.42■■□□□ 1.02
CLK3-225ENST00000569063 DMDP11532 3685 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 ACO1P21399 889 aaKnown RBP21.42■■□□□ 1.02
CLK3-225ENST00000569063 DRD1P21728 446 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 KIF11P52732 1056 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 NRLP54845 237 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 YWHAEP62258 255 aaKnown RBP21.42■■□□□ 1.02
CLK3-225ENST00000569063 SATB1Q01826 763 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 CLEC17AQ6ZS10 378 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 TRIM59Q8IWR1 403 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 FANCMQ8IYD8 2048 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 ATRIPQ8WXE1 791 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 UBXN6Q9BZV1 441 aa21.42■■□□□ 1.02
CLK3-225ENST00000569063 FBRSL1Q9HCM7 1045 aaKnown RBP21.42■■□□□ 1.02
CLK3-225ENST00000569063 FGFR1OPO95684 399 aaKnown RBP21.41■■□□□ 1.02
CLK3-225ENST00000569063 CETN1Q12798 172 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 UBR7Q8N806 425 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 ANKRD52Q8NB46 1076 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 LMO3Q8TAP4 145 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 JAKMIP2Q96AA8 810 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 CYLDQ9NQC7 956 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 TBC1D14Q9P2M4 693 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 RWDD2AQ9UIY3 292 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 USP3Q9Y6I4 520 aa21.41■■□□□ 1.02
CLK3-225ENST00000569063 MYH10P35580 1976 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms