RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SRGAP1Q7Z6B7 1085 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 FAM228AQ86W67 206 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SNX32Q86XE0 403 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 AFAP1L2Q8N4X5 818 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SCAIQ8N9R8 606 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 NSUN7Q8NE18 718 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 NSMCE1Q8WV22 266 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 CASP10Q92851 521 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SLC39A13Q96H72 371 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 AHCYL2Q96HN2 611 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 PAWRQ96IZ0 340 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 COG3Q96JB2 828 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 MAELQ96JY0 434 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 CCDC42Q96M95 316 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ZNF512Q96ME7 567 aaPredicted RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 ACAP3Q96P50 834 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 MOGAT1Q96PD6 335 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 FDXACB1Q9BRP7 624 aaPredicted RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 ZNF747Q9BV97 191 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 MOV10L1Q9BXT6 1211 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 GPR87Q9BY21 358 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 DNAI2Q9GZS0 605 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 DRC3Q9H069 523 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 NSRP1Q9H0G5 558 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 WNT8AQ9H1J5 351 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 PRDM12Q9H4Q4 367 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 PARVBQ9HBI1 364 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 VCX3AQ9NNX9 186 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ATAD3AQ9NVI7 634 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 KCTD5Q9NXV2 234 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 MOCS1Q9NZB8 636 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 IL1RAPL1Q9NZN1 696 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 NDUFA13Q9P0J0 144 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 DPP7Q9UHL4 492 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 GGA2Q9UJY4 613 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 MTUS1Q9ULD2 1270 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 TPCN1Q9ULQ1 816 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SATB2Q9UPW6 733 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 C2CD2Q9Y426 696 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ZNF711Q9Y462 761 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 PRKAB1Q9Y478 270 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 HS3ST3A1Q9Y663 406 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 LMTK2Q8IWU2 1503 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ABCC2Q92887 1545 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 TOP2BQ02880 1626 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 FGD5Q6ZNL6 1462 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 GRIN2DO15399 1336 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 NAIPQ13075 1403 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 GCC2Q8IWJ2 1684 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ARPC4-TTLL3A0A0A6YYG9 625 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 A0A1W2PRQ8 180 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 CCDC169A6NNP5 214 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 NPIPB8E9PQR5 432 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 CPLX1O14810 134 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 EIF3HO15372 352 aaKnown RBP eCLIP3.47□□□□□ -1.85
VPS35-208ENST00000568612 PRC1O43663 620 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 NMT2O60551 498 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 USO1O60763 962 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 PFDN1O60925 122 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 RNASEH2AO75792 299 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 IPO13O94829 963 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 SEC24DO94855 1032 aaPredicted RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 PAHP00439 452 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 RPN1P04843 607 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 S100A6P06703 90 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 C1SP09871 688 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 LTA4HP09960 611 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 PDHBP11177 359 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ALAS1P13196 640 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 SCG2P13521 617 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 HK1P19367 917 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 IBSPP21815 317 aaPredicted RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 NFKBIAP25963 317 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ANXA13P27216 316 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 KRT9P35527 623 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 POLD2P49005 469 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 MAN2A2P49641 1150 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 PDE6CP51160 858 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 SNX16P57768 344 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 BPIFB3P59826 476 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 DSTNP60981 165 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 MXRA7P84157 204 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 PTH1RQ03431 593 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 HSPA14Q0VDF9 509 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 FOXE3Q13461 319 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 UBE4AQ14139 1066 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 RRP1BQ14684 758 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 UBE3CQ15386 1083 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 FSCN1Q16658 493 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 LSM12Q3MHD2 195 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 SLC44A4Q53GD3 710 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 SPECC1Q5M775 1068 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ZNF362Q5T0B9 420 aaPredicted RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 C10orf62Q5T681 223 aaPredicted RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 NDUFAF5Q5TEU4 345 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 METTL11BQ5VVY1 283 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 SPATA1Q5VX52 437 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 TBC1D9BQ66K14 1250 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 MFSD5Q6N075 450 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 SARM1Q6SZW1 724 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms