RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 TTC8Q8TAM2 541 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 RIN3Q8TB24 985 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 TATDN2Q93075 761 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 RNF38Q9H0F5 515 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 ECT2Q9H8V3 914 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 PRMT8Q9NR22 394 aaPredicted RBP19.78■□□□□ 0.76
CLN3-227ENST00000567495 TLR8Q9NR97 1041 aaKnown RBP19.78■□□□□ 0.76
CLN3-227ENST00000567495 CHORDC1Q9UHD1 332 aaPredicted RBP19.78■□□□□ 0.76
CLN3-227ENST00000567495 TRDMT1O14717 391 aaKnown RBP19.77■□□□□ 0.76
CLN3-227ENST00000567495 GFRA3O60609 400 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 BEST1O76090 585 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 CCDC192P0DO97 292 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 ARSAP15289 507 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 RAD23BP54727 409 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 PON2Q15165 354 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 ZNF394Q53GI3 561 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 TRIM68Q6AZZ1 485 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 ARID3AQ99856 593 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 UBXN6Q9BZV1 441 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 GMIPQ9P107 970 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 RWDD2AQ9UIY3 292 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 KIAA1257Q9ULG3 409 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 SCML2Q9UQR0 700 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 CPQQ9Y646 472 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 WNT6Q9Y6F9 365 aa19.77■□□□□ 0.76
CLN3-227ENST00000567495 OTOL1A6NHN0 477 aaPredicted RBP19.76■□□□□ 0.75
CLN3-227ENST00000567495 COCHO43405 550 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 NFATC1O95644 943 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 MBL2P11226 248 aaPredicted RBP19.76■□□□□ 0.75
CLN3-227ENST00000567495 STX17P56962 302 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 CSTF1Q05048 431 aaKnown RBP19.76■□□□□ 0.75
CLN3-227ENST00000567495 CCINQ13939 588 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 EML3Q32P44 896 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 TMEM196Q5HYL7 178 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 PPP1R26Q5T8A7 1209 aaPredicted RBP19.76■□□□□ 0.75
CLN3-227ENST00000567495 ARHGAP17Q68EM7 881 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 TRIM59Q8IWR1 403 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 SLC4A11Q8NBS3 891 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 NT5C1BQ96P26 610 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 SRRTQ9BXP5 876 aaKnown RBP19.76■□□□□ 0.75
CLN3-227ENST00000567495 NACA2Q9H009 215 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 CLSTN2Q9H4D0 955 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 TBC1D14Q9P2M4 693 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 PCDHGA2Q9Y5H1 932 aa19.76■□□□□ 0.75
CLN3-227ENST00000567495 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLN3-227ENST00000567495 CACNA1IQ9P0X4 2223 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 PTPRDP23468 1912 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 E2F8A0AVK6 867 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 HHLA1C9JL84 531 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 ACO1P21399 889 aaKnown RBP19.75■□□□□ 0.75
CLN3-227ENST00000567495 DRD1P21728 446 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 CXCL12P48061 93 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 PSEN1P49768 467 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 NRLP54845 237 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 ANKRD52Q8NB46 1076 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 ATRIPQ8WXE1 791 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 ZSCAN32Q9NX65 697 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 SMPD4Q9NXE4 827 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 CFAP97Q9P2B7 532 aa19.75■□□□□ 0.75
CLN3-227ENST00000567495 COL4A2P08572 1712 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 PTPRZ1P23471 2315 aaPredicted RBP19.74■□□□□ 0.75
CLN3-227ENST00000567495 RIF1Q5UIP0 2472 aaKnown RBP19.74■□□□□ 0.75
CLN3-227ENST00000567495 TLR5O60602 858 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 GJA4P35212 333 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 KIF11P52732 1056 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 ZXDBP98169 803 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 FBXO43Q4G163 708 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 KLHDC10Q6PID8 442 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 TADA2BQ86TJ2 420 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 CCDC26Q8TAB7 109 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 NELL1Q92832 810 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 OTUB2Q96DC9 234 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 P2RY13Q9BPV8 354 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 CYLDQ9NQC7 956 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 COL4A3Q01955 1670 aa19.74■□□□□ 0.75
CLN3-227ENST00000567495 PRR23AA6NEV1 266 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 ATG13O75143 517 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 PAPSS2O95340 614 aaPredicted RBP19.73■□□□□ 0.75
CLN3-227ENST00000567495 AFPP02771 609 aaKnown RBP19.73■□□□□ 0.75
CLN3-227ENST00000567495 GOLGA8FQ08AF8 430 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 GOLGA8DPQ0D2H9 430 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 KCNH2Q12809 1159 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 LRMPQ12912 555 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 SGO2Q562F6 1265 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 CCDC186Q7Z3E2 898 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 ADGRG2Q8IZP9 1017 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 ZNF276Q8N554 614 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 CDK5RAP1Q96SZ6 601 aaKnown RBP19.73■□□□□ 0.75
CLN3-227ENST00000567495 LINC00597Q9H2U6 94 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 CCSER2Q9H7U1 834 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 RBM12Q9NTZ6 932 aaKnown RBP19.73■□□□□ 0.75
CLN3-227ENST00000567495 HESX1Q9UBX0 185 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 USP3Q9Y6I4 520 aa19.73■□□□□ 0.75
CLN3-227ENST00000567495 DENND4CQ5VZ89 1909 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 TICRRQ7Z2Z1 1910 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 LMNAP02545 664 aaKnown RBP19.72■□□□□ 0.75
CLN3-227ENST00000567495 PAEPP09466 180 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 VDRP11473 427 aa19.72■□□□□ 0.75
CLN3-227ENST00000567495 ATP5C1P36542 298 aaKnown RBP19.72■□□□□ 0.75
CLN3-227ENST00000567495 GALK1P51570 392 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms