RNA–Protein interactions for RNA: ENST00000565995.5

RNF40-208, Transcript of ring finger protein 40, human

TSL 4

Gene RNF40, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF40-208	ENST00000565995	ARHGEF4	Q9NR80	690 aa		13.61	□□□□□ -0.23
RNF40-208	ENST00000565995	STK17A	Q9UEE5	414 aa		13.61	□□□□□ -0.23
RNF40-208	ENST00000565995	PCDHB13	Q9Y5F0	798 aa		13.61	□□□□□ -0.23
RNF40-208	ENST00000565995	CPQ	Q9Y646	472 aa		13.61	□□□□□ -0.23
RNF40-208	ENST00000565995	SETX	Q7Z333	2677 aa	Known RBP	13.61	□□□□□ -0.23
RNF40-208	ENST00000565995	KNL1	Q8NG31	2342 aa		13.61	□□□□□ -0.23
RNF40-208	ENST00000565995	GOLGA4	Q13439	2230 aa	Known RBP	13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	FRMD3	A2A2Y4	597 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	ARHGAP33	O14559	1287 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	OPHN1	O60890	802 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	KRT19	P08727	400 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	ADH5	P11766	374 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	GABRG2	P18507	467 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	ANXA13	P27216	316 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	FAM193A	P78312	1265 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	GAD2	Q05329	585 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	ALCAM	Q13740	583 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	PREPL	Q4J6C6	727 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	DYM	Q7RTS9	669 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	TRMT11	Q7Z4G4	463 aa	Known RBP	13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	TTC30A	Q86WT1	665 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	HSCB	Q8IWL3	235 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	HDDC3	Q8N4P3	179 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	HMGB4	Q8WW32	186 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	OVCA2	Q8WZ82	227 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	HPDL	Q96IR7	371 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	ZFR	Q96KR1	1074 aa	Known RBP	13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	MTMR12	Q9C0I1	747 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	CD248	Q9HCU0	757 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	HCN2	Q9UL51	889 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	GPSM3	Q9Y4H4	160 aa		13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	URB1	O60287	2271 aa	Known RBP	13.6	□□□□□ -0.23
RNF40-208	ENST00000565995	APC2	O95996	2303 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995		A0A1W2PQD8	194 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	TCRBV21S2A2	A0A5A6	115 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995		H3BQV1	296 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	HOXC11	O43248	304 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	TACC1	O75410	805 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	GJB2	P29033	226 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	PSMC1	P62191	440 aa	Known RBP	13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	ZNF33A	Q06730	810 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	TAF10	Q12962	218 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	SURF1	Q15526	300 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	LY6G5C	Q5SRR4	150 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	ARMCX6	Q7L4S7	300 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	GPD1L	Q8N335	351 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	CHCHD4	Q8N4Q1	142 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	ADAMTS14	Q8WXS8	1223 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	ANKRD36BP1	Q96IX9	119 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	EPSTI1	Q96J88	318 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	FAM84A	Q96KN4	292 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	CBWD1	Q9BRT8	395 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	TMEM30A	Q9NV96	361 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	IL37	Q9NZH6	218 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	CFAP97	Q9P2B7	532 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	NME7	Q9Y5B8	376 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	PTPRJ	Q12913	1337 aa		13.59	□□□□□ -0.23
RNF40-208	ENST00000565995	HELZ2	Q9BYK8	2649 aa	Known RBP	13.59	□□□□□ -0.23
RNF40-208	ENST00000565995		A0A1W2PQF6	199 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	GOLGA8IP	A6NC78	632 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	GOLGA8J	A6NMD2	632 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995		F8VP50	259 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	CFI	P05156	583 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	SYP	P08247	313 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	PDGFRB	P09619	1106 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	TMEM191B	P0C7N4	346 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	GNL1	P36915	607 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	CASP5	P51878	434 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	ATXN3	P54252	364 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	CYP27A1	Q02318	531 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	RPL6	Q02878	288 aa	Known RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	SF3A1	Q15459	793 aa	Known RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	DUOXA2	Q1HG44	320 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	TDRD10	Q5VZ19	366 aa	Known RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	NUDT18	Q6ZVK8	323 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	USP49	Q70CQ1	688 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	SV2B	Q7L1I2	683 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	BRAP	Q7Z569	592 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	SLC41A1	Q8IVJ1	513 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	MINDY1	Q8N5J2	469 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	PDZD8	Q8NEN9	1154 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	OR5B17	Q8NGF7	314 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	RASSF8	Q8NHQ8	419 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	ZNF419	Q96HQ0	510 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	SLITRK1	Q96PX8	696 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	MYLK	Q15746	1914 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	ATXN2	Q99700	1313 aa	Known RBP	13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	KNTC1	P50748	2209 aa		13.58	□□□□□ -0.24
RNF40-208	ENST00000565995	IGHV1OR15-9	A0A0B4J2B8	117 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	FAM92A	A1XBS5	289 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	ZNF217	O75362	1048 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	TULP3	O75386	442 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	GCNT3	O95395	438 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	ZDHHC11B	P0C7U3	371 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	MBL2	P11226	248 aa	Predicted RBP	13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	NTSR1	P30989	418 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	TUB	P50607	506 aa		13.57	□□□□□ -0.24
RNF40-208	ENST00000565995	CACNA2D1	P54289	1103 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms