RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CILPO75339 1184 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 OLFM2O95897 454 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 EGFP01133 1207 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 LRRC63Q05C16 580 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 ZNF394Q53GI3 561 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 NAIF1Q69YI7 327 aaPredicted RBP21.94■■□□□ 1.1
CLN3-219ENST00000565778 HEATR6Q6AI08 1181 aaKnown RBP21.94■■□□□ 1.1
CLN3-219ENST00000565778 FILIP1Q7Z7B0 1213 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 DDX42Q86XP3 938 aaKnown RBP eCLIP21.94■■□□□ 1.1
CLN3-219ENST00000565778 ADGRG2Q8IZP9 1017 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 DCLK2Q8N568 766 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 WHAMMQ8TF30 809 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 CD101Q93033 1021 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 HEXIM2Q96MH2 286 aaKnown RBP21.94■■□□□ 1.1
CLN3-219ENST00000565778 C2orf42Q9NWW7 574 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 GMIPQ9P107 970 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 NCDNQ9UBB6 729 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 TRIM49BA6NDI0 452 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 CHURC1-FNTBB4DL54 471 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 SLC9A3R1O14745 358 aaPredicted RBP21.93■■□□□ 1.1
CLN3-219ENST00000565778 PSMA7O14818 248 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 SLC16A3O15427 465 aaKnown RBP21.93■■□□□ 1.1
CLN3-219ENST00000565778 FNTBP49356 437 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 SNX30Q5VWJ9 437 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 KIAA2013Q8IYS2 634 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 TATDN2Q93075 761 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 JAKMIP2Q96AA8 810 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 DHTKD1Q96HY7 919 aaPredicted RBP21.93■■□□□ 1.1
CLN3-219ENST00000565778 FAXDC2Q96IV6 333 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 NACA2Q9H009 215 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 ANAPC1Q9H1A4 1944 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 EPC1Q9H2F5 836 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 ARMCX3Q9UH62 379 aaPredicted RBP21.93■■□□□ 1.1
CLN3-219ENST00000565778 MAN1B1Q9UKM7 699 aa21.93■■□□□ 1.1
CLN3-219ENST00000565778 KIF26AQ9ULI4 1882 aaPredicted RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 FAM92AA1XBS5 289 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 K7ESF4 209 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 SCAMP3O14828 347 aaKnown RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 GADD45BO75293 160 aaPredicted RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 PAPSS2O95340 614 aaPredicted RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 DMWDQ09019 674 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 FBXO43Q4G163 708 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 PKN3Q6P5Z2 889 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 ZC3H3Q8IXZ2 948 aaKnown RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 TTC39CQ8N584 583 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 KIAA1958Q8N8K9 716 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 SECISBP2LQ93073 1101 aaKnown RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 CCSER2Q9H7U1 834 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 TLR8Q9NR97 1041 aaKnown RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 CISHQ9NSE2 258 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 RAB23Q9ULC3 237 aa21.92■■□□□ 1.1
CLN3-219ENST00000565778 SMG5Q9UPR3 1016 aaKnown RBP21.92■■□□□ 1.1
CLN3-219ENST00000565778 RIF1Q5UIP0 2472 aaKnown RBP21.91■■□□□ 1.1
CLN3-219ENST00000565778 RNF40O75150 1001 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 ACO1P21399 889 aaKnown RBP21.91■■□□□ 1.1
CLN3-219ENST00000565778 PPP1R2P41236 205 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 CBWD6Q4V339 395 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 CBWD3Q5JTY5 395 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 CBWD5Q5RIA9 395 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 PPP1R26Q5T8A7 1209 aaPredicted RBP21.91■■□□□ 1.1
CLN3-219ENST00000565778 KLHL10Q6JEL2 608 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 CLEC20AQ6ZU45 233 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 LONP2Q86WA8 852 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 TBC1D14Q9P2M4 693 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 CIZ1Q9ULV3 898 aaPredicted RBP21.91■■□□□ 1.1
CLN3-219ENST00000565778 SLC8A2Q9UPR5 921 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 SH3BP1Q9Y3L3 701 aa21.91■■□□□ 1.1
CLN3-219ENST00000565778 E2F8A0AVK6 867 aa21.9■■□□□ 1.1
CLN3-219ENST00000565778 ZDHHC11BP0C7U3 371 aa21.9■■□□□ 1.1
CLN3-219ENST00000565778 CD44P16070 742 aaKnown RBP21.9■■□□□ 1.1
CLN3-219ENST00000565778 TUBP50607 506 aa21.9■■□□□ 1.1
CLN3-219ENST00000565778 DHCR24Q15392 516 aa21.9■■□□□ 1.1
CLN3-219ENST00000565778 TMEM176AQ96HP8 235 aa21.9■■□□□ 1.1
CLN3-219ENST00000565778 DUSP16Q9BY84 665 aa21.9■■□□□ 1.1
CLN3-219ENST00000565778 METTL14Q9HCE5 456 aaKnown RBP21.9■■□□□ 1.1
CLN3-219ENST00000565778 SCML2Q9UQR0 700 aa21.9■■□□□ 1.1
CLN3-219ENST00000565778 FANCMQ8IYD8 2048 aa21.89■■□□□ 1.1
CLN3-219ENST00000565778 HHLA1C9JL84 531 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 BIN1O00499 593 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 HRO43593 1189 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 TLR5O60602 858 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 HOXA6P31267 233 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 HOXC13P31276 330 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 CNR2P34972 360 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 PGFP49763 221 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 SIM2Q14190 667 aaPredicted RBP21.89■■□□□ 1.09
CLN3-219ENST00000565778 LPAL2Q16609 132 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 PRR23BQ6ZRT6 265 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 GPRIN1Q7Z2K8 1008 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 RPLP0P6Q8NHW5 317 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 ARID3AQ99856 593 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 COQ4Q9Y3A0 265 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 CFAP54Q96N23 3096 aa21.89■■□□□ 1.09
CLN3-219ENST00000565778 FAM186AA6NE01 2351 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 TBX18O95935 607 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 CYP17A1P05093 508 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 IRF1P10914 325 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 PXNP49023 591 aaPredicted RBP21.88■■□□□ 1.09
CLN3-219ENST00000565778 CCDC40Q4G0X9 1142 aa21.88■■□□□ 1.09
CLN3-219ENST00000565778 RHBDF2Q6PJF5 856 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms