RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ADH1CP00326 375 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 APODP05090 189 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 CHRM1P11229 460 aaPredicted RBP17.91■□□□□ 0.46
CLN3-211ENST00000564091 ADH5P11766 374 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 AFMP43652 599 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 DHPSP49366 369 aaPredicted RBP17.91■□□□□ 0.46
CLN3-211ENST00000564091 KDSRQ06136 332 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 BIRC3Q13489 604 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 CUL4BQ13620 913 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 BMT2Q1RMZ1 405 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 LY6G5CQ5SRR4 150 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 SCARA5Q6ZMJ2 495 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 PAQR9Q6ZVX9 377 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 C11orf74Q86VG3 221 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 GRAMD1CQ8IYS0 662 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 FRMD1Q8N878 549 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 MED10Q9BTT4 135 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 ARHGEF4Q9NR80 690 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 USP24Q9UPU5 2620 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 TCHHQ07283 1943 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 GIPC1O14908 333 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 KHNYNO15037 678 aaKnown RBP17.9■□□□□ 0.46
CLN3-211ENST00000564091 RTN3O95197 1032 aaPredicted RBP17.9■□□□□ 0.46
CLN3-211ENST00000564091 KIR2DL1P43626 348 aaPredicted RBP17.9■□□□□ 0.46
CLN3-211ENST00000564091 NOVA1P51513 510 aaKnown RBP17.9■□□□□ 0.46
CLN3-211ENST00000564091 KNOP1Q1ED39 458 aaKnown RBP17.9■□□□□ 0.46
CLN3-211ENST00000564091 ZNF699Q32M78 642 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 HECTD3Q5T447 861 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 CYP2U1Q7Z449 544 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 FAM35AQ86V20 835 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 DDX42Q86XP3 938 aaKnown RBP eCLIP17.9■□□□□ 0.46
CLN3-211ENST00000564091 C12orf56Q8IXR9 622 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 NAT16Q8N8M0 369 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 OLIG1Q8TAK6 271 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 PIGKQ92643 395 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 ZFRQ96KR1 1074 aaKnown RBP17.9■□□□□ 0.46
CLN3-211ENST00000564091 SDCBP2Q9H190 292 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 CCSER2Q9H7U1 834 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 TBC1D14Q9P2M4 693 aa17.9■□□□□ 0.46
CLN3-211ENST00000564091 A0A0A0MRY4 1105 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 PVALEFA0A1B0GWK0 134 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 E2F8A0AVK6 867 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 LRRIQ3A6PVS8 624 aaPredicted RBP17.89■□□□□ 0.45
CLN3-211ENST00000564091 TNFRSF10BO14763 440 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 ADAM23O75077 832 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 ALDH1A2O94788 518 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 EIF2DP41214 584 aaKnown RBP17.89■□□□□ 0.45
CLN3-211ENST00000564091 GRIA2P42262 883 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 SLC5A3P53794 718 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 IRX4P78413 519 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 SHC2P98077 582 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 ORC1Q13415 861 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 NCOA4Q13772 614 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 ZNF667Q5HYK9 610 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 PDZD8Q8NEN9 1154 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 OVCA2Q8WZ82 227 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 WBP2Q969T9 261 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 VRTNQ9H8Y1 702 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 MAGEF1Q9HAY2 307 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 GMIPQ9P107 970 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 CGNQ9P2M7 1197 aaKnown RBP17.89■□□□□ 0.45
CLN3-211ENST00000564091 PCDHA7Q9UN72 937 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 ASPMQ8IZT6 3477 aa17.89■□□□□ 0.45
CLN3-211ENST00000564091 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 VNN1O95497 513 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 C4BPAP04003 597 aaKnown RBP17.88■□□□□ 0.45
CLN3-211ENST00000564091 IRF1P10914 325 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 P2RY2P41231 377 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 ME1P48163 572 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 PGFP49763 221 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 GAD2Q05329 585 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 EOGTQ5NDL2 527 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 DAB2IPQ5VWQ8 1189 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 ARMCX6Q7L4S7 300 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 ACOT1Q86TX2 421 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 BBS7Q8IWZ6 715 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 TMEFF1Q8IYR6 380 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 FUKQ8N0W3 1084 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 PARD3BQ8TEW8 1205 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 HMGB4Q8WW32 186 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 POLMQ9NP87 494 aaPredicted RBP17.88■□□□□ 0.45
CLN3-211ENST00000564091 DMAP1Q9NPF5 467 aaPredicted RBP17.88■□□□□ 0.45
CLN3-211ENST00000564091 FAM13BQ9NYF5 915 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 IL37Q9NZH6 218 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 BCCIPQ9P287 314 aaKnown RBP eCLIP17.88■□□□□ 0.45
CLN3-211ENST00000564091 SH3BP1Q9Y3L3 701 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 FRYQ5TBA9 3013 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 ATP8B3O60423 1300 aa17.88■□□□□ 0.45
CLN3-211ENST00000564091 TCRBV21S2A2A0A5A6 115 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 TBC1D3BA6NDS4 549 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.87■□□□□ 0.45
CLN3-211ENST00000564091 CDX4O14627 284 aaPredicted RBP17.87■□□□□ 0.45
CLN3-211ENST00000564091 TRIM24O15164 1050 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 MAP3K13O43283 966 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 AP1G2O75843 785 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 BEST1O76090 585 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 CCDC130P13994 396 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 PTGER3P43115 390 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 TNFRSF4P43489 277 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 DLG4P78352 724 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms