RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NR1H3Q13133 447 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ALCAMQ13740 583 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 SIX1Q15475 284 aaPredicted RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 MDH1BQ5I0G3 518 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ZNF746Q6NUN9 644 aaPredicted RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 LBX2Q6XYB7 198 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ANO5Q75V66 913 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 CPNE8Q86YQ8 564 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ULK2Q8IYT8 1036 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 MRRFQ96E11 262 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 ZSWIM1Q9BR11 485 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 THTPAQ9BU02 230 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 SENP6Q9GZR1 1112 aaPredicted RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 TMEM206Q9H813 350 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 KIAA1586Q9HCI6 787 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 SEPT11Q9NVA2 429 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 NEU2Q9Y3R4 380 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 PCDHA10Q9Y5I2 948 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ATP8B3O60423 1300 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 MYOCOSA0A1B0GUC4 107 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 NDC80O14777 642 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 MAGEC1O60732 1142 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ADAM23O75077 832 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 CIB2O75838 187 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 PDGFRBP09619 1106 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 MAPTP10636 758 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 KCNA2P16389 499 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 KRT15P19012 456 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 CYP1B1Q16678 543 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 TRMT5Q32P41 509 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 ANKRD20A4Q4UJ75 823 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 PDCD4Q53EL6 469 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 SEL1L2Q5TEA6 688 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 DHDDSQ86SQ9 333 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 UBL4BQ8N7F7 174 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 RBM15BQ8NDT2 890 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 ZSWIM2Q8NEG5 633 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 CCDC110Q8TBZ0 833 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ZNF398Q8TD17 642 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 GIPC3Q8TF64 312 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 FAM172AQ8WUF8 416 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 KIFC3Q9BVG8 833 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 INTS2Q9H0H0 1204 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 C12orf65Q9H3J6 166 aaKnown RBP13.86□□□□□ -0.19
CLK3-206ENST00000562078 SELENONQ9NZV5 590 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 GABBR1Q9UBS5 961 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 ADAMTS6Q9UKP5 1117 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 LZTS1Q9Y250 596 aa13.86□□□□□ -0.19
CLK3-206ENST00000562078 MCM3APO60318 1980 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 STT3AP46977 705 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 DLG4P78352 724 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 C3orf62Q6ZUJ4 267 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 PPP1R10Q96QC0 940 aaKnown RBP13.85□□□□□ -0.19
CLK3-206ENST00000562078 TCHPQ9BT92 498 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 TMEM120AQ9BXJ8 343 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 ALG13Q9NP73 1137 aaKnown RBP13.85□□□□□ -0.19
CLK3-206ENST00000562078 ANKEF1Q9NU02 776 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 DNAJB4Q9UDY4 337 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 DMTF1Q9Y222 760 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 A0A1W2PPM1 405 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 SH3PXD2BA1X283 911 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 POC1B-GALNT4F8VUJ3 575 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 LDHAP00338 332 aaKnown RBP13.85□□□□□ -0.19
CLK3-206ENST00000562078 ANXA13P27216 316 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 CLCN2P51788 898 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 SOX10P56693 466 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 PFKPQ01813 784 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 SMUG1Q53HV7 270 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 SLC13A5Q86YT5 568 aaPredicted RBP13.85□□□□□ -0.19
CLK3-206ENST00000562078 RDM1Q8NG50 284 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 GDPD5Q8WTR4 605 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 CCDC77Q9BR77 488 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 LIN28AQ9H9Z2 209 aaKnown RBP13.85□□□□□ -0.19
CLK3-206ENST00000562078 KCNK13Q9HB14 408 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 HSPBP1Q9NZL4 362 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 DNAJC12Q9UKB3 198 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 CROTQ9UKG9 612 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 ITGB1BP2Q9UKP3 347 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 MTUS1Q9ULD2 1270 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 TSC22D4Q9Y3Q8 395 aa13.85□□□□□ -0.19
CLK3-206ENST00000562078 FAM32AQ9Y421 112 aaKnown RBP13.85□□□□□ -0.19
CLK3-206ENST00000562078 HBS1LQ9Y450 684 aaKnown RBP13.85□□□□□ -0.19
CLK3-206ENST00000562078 LRRC37A2A6NM11 1700 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 EXOC1LA0A1B0GW35 172 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 TTLL13PA6NNM8 815 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 H3BSA7 217 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 CYP26A1O43174 497 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 ENO1P06733 434 aaKnown RBP13.84□□□□□ -0.19
CLK3-206ENST00000562078 ITIH2P19823 946 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 ADRA1DP25100 572 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 IVDP26440 423 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 NCKAP1LP55160 1127 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 GTF2BQ00403 316 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 CDK16Q00536 496 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 FOLH1Q04609 750 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 STAT4Q14765 748 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 DRAP1Q14919 205 aaPredicted RBP13.84□□□□□ -0.19
CLK3-206ENST00000562078 C6orf163Q5TEZ5 329 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 GSTCDQ8NEC7 633 aa13.84□□□□□ -0.19
CLK3-206ENST00000562078 MTBPQ96DY7 904 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 132.6 ms