RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	SMARCAL1	Q9NZC9	954 aa		7.93	□□□□□ -1.14
TPM1-231	ENST00000561395	CACNG4	Q9UBN1	327 aa		7.93	□□□□□ -1.14
TPM1-231	ENST00000561395	TSPAN16	Q9UKR8	245 aa		7.93	□□□□□ -1.14
TPM1-231	ENST00000561395	STRIP2	Q9ULQ0	834 aa		7.93	□□□□□ -1.14
TPM1-231	ENST00000561395	OTOGL	Q3ZCN5	2332 aa		7.93	□□□□□ -1.14
TPM1-231	ENST00000561395	MIA3	Q5JRA6	1907 aa		7.93	□□□□□ -1.14
TPM1-231	ENST00000561395	ZFHX4	Q86UP3	3567 aa		7.93	□□□□□ -1.14
TPM1-231	ENST00000561395	C2orf16	Q68DN1	1984 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CASTOR2	A6NHX0	329 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	MYO1F	O00160	1098 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	PGRMC1	O00264	195 aa	Known RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	GABRD	O14764	452 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	HCRT	O43612	131 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	SPOP	O43791	374 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	PROSC	O94903	275 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	POMC	P01189	267 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	ERBB2	P04626	1255 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	SETSIP	P0DME0	302 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	IBSP	P21815	317 aa	Predicted RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	PAX3	P23760	479 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	IGFBP6	P24592	240 aa	Predicted RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	DNAJB1	P25685	340 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	LMO2	P25791	158 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CTNNA2	P26232	953 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	MAN1A1	P33908	653 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CTNNA1	P35221	906 aa	Known RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	MLLT3	P42568	568 aa	Predicted RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	SLC1A1	P43005	524 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	PAFAH1B1	P43034	410 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	NRIP1	P48552	1158 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	MARCKSL1	P49006	195 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	TUSC3	Q13454	348 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	PKDCC	Q504Y2	493 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CLLU1OS	Q5K130	101 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CYP4A22	Q5TCH4	519 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	DCAF12L1	Q5VU92	463 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	WSCD1	Q658N2	575 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	GLB1L	Q6UWU2	654 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	TTC30A	Q86WT1	665 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	XYLT1	Q86Y38	959 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CPNE8	Q86YQ8	564 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	TMEM86A	Q8N2M4	240 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	RASGEF1C	Q8N431	466 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	GPR161	Q8N6U8	529 aa	Known RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	UBL4B	Q8N7F7	174 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	NOA1	Q8NC60	698 aa	Known RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	B3GALNT2	Q8NCR0	500 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	C3orf20	Q8ND61	904 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	C3orf58	Q8NDZ4	430 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	FEZF2	Q8TBJ5	459 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	URGCP	Q8TCY9	931 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	ACTRT1	Q8TDG2	376 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	ANKRD7	Q92527	254 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	ALG3	Q92685	438 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CLP1	Q92989	425 aa	Known RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	MS4A14	Q96JA4	679 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	TNIP3	Q96KP6	325 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CPXM1	Q96SM3	734 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	PAAF1	Q9BRP4	392 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	SELENOO	Q9BVL4	669 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	ZMYND15	Q9H091	742 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CARD9	Q9H257	536 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	DPEP3	Q9H4B8	488 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	RC3H2	Q9HBD1	1191 aa	Known RBP	7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	FAM49B	Q9NUQ9	324 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	EHD2	Q9NZN4	543 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	WDR35	Q9P2L0	1181 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	TJP2	Q9UDY2	1190 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	LCMT1	Q9UIC8	334 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	INPP5F	Q9Y2H2	1132 aa		7.92	□□□□□ -1.14
TPM1-231	ENST00000561395	CHD8	Q9HCK8	2581 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	CCDC66	A2RUB6	948 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	TMEM191C	A6NGB0	347 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	DPYSL4	O14531	572 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	ENPP3	O14638	875 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	CEP104	O60308	925 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	GJB6	O95452	261 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	PDGFRB	P09619	1106 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	ODC1	P11926	461 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	CCDC130	P13994	396 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	SP100	P23497	879 aa	Predicted RBP	7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	PEX5	P50542	639 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	BCAT1	P54687	386 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	PSMC1	P62191	440 aa	Known RBP	7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	DSC1	Q08554	894 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	C2orf54	Q08AI8	447 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	BST2	Q10589	180 aa	Known RBP	7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	ZNF268	Q14587	947 aa	Predicted RBP	7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	PUM1	Q14671	1186 aa	Known RBP eCLIP	7.91	□□□□□ -1.14	5e-9	■□□□□ 8.1
TPM1-231	ENST00000561395	NOMO2	Q5JPE7	1267 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	CD300LG	Q6UXG3	332 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	DSTYK	Q6XUX3	929 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	RBM23	Q86U06	439 aa	Known RBP	7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	KIAA2013	Q8IYS2	634 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	MMGT1	Q8N4V1	131 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	NIPA2	Q8N8Q9	360 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	SPATA4	Q8NEY3	305 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	UBA3	Q8TBC4	463 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	SPATA18	Q8TC71	538 aa		7.91	□□□□□ -1.14
TPM1-231	ENST00000561395	IPO4	Q8TEX9	1081 aa	Known RBP	7.91	□□□□□ -1.14

Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms