RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ZNF806P0C7X5 589 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 PFKLP17858 780 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 ATICP31939 592 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 SLC6A11P48066 632 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 PDE6CP51160 858 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 DLG4P78352 724 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 BIRC3Q13489 604 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 DHCR24Q15392 516 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 AASDHQ4L235 1098 aaPredicted RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 C2orf27AQ580R0 203 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 PLA2G2CQ5R387 149 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 PAQR9Q6ZVX9 377 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 C12orf40Q86WS4 652 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 PLPP6Q8IY26 295 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 ADGRG2Q8IZP9 1017 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 CCDC33Q8N5R6 958 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 SCAMP5Q8TAC9 235 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 PARD3BQ8TEW8 1205 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 USP33Q8TEY7 942 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 SYAP1Q96A49 352 aaPredicted RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 EXOC4Q96A65 974 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 ACDQ96AP0 544 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 PAGE5Q96GU1 130 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 ZC3H10Q96K80 434 aaKnown RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 DUSP15Q9H1R2 295 aaPredicted RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 CFAP97Q9P2B7 532 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 CGNQ9P2M7 1197 aaKnown RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 CHORDC1Q9UHD1 332 aaPredicted RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 COCHO43405 550 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 AKAP3O75969 853 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 CLSTN1O94985 981 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 HSP90AA1P07900 732 aaKnown RBP12.36□□□□□ -0.43
USP3-220ENST00000561381 ADRB1P08588 477 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 SLFN14P0C7P3 912 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 MBL2P11226 248 aaPredicted RBP12.36□□□□□ -0.43
USP3-220ENST00000561381 YWHAQP27348 245 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 MPLP40238 635 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 PPP3CCP48454 512 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 DGKEP52429 567 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 ORC1Q13415 861 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 NCOA4Q13772 614 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 ZNF699Q32M78 642 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 KMT5BQ4FZB7 885 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 TCEAL6Q6IPX3 200 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 RHBDF2Q6PJF5 856 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 FAM35AQ86V20 835 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 HSCBQ8IWL3 235 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 CEP57L1Q8IYX8 460 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 NUP93Q8N1F7 819 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 C12orf50Q8NA57 414 aaPredicted RBP12.36□□□□□ -0.43
USP3-220ENST00000561381 TCEAL3Q969E4 200 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 FBXO32Q969P5 355 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 SLITRK1Q96PX8 696 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 MED10Q9BTT4 135 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 TPSD1Q9BZJ3 242 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 KCTD10Q9H3F6 313 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 VRTNQ9H8Y1 702 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 DMAC2Q9NW81 257 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 EHD2Q9NZN4 543 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 EBF1Q9UH73 591 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 RCOR1Q9UKL0 485 aa12.36□□□□□ -0.43
USP3-220ENST00000561381 CNOT1A5YKK6 2376 aaKnown RBP12.36□□□□□ -0.43
USP3-220ENST00000561381 TNFRSF10BO14763 440 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 CCDC130P13994 396 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 HNRNPLP14866 589 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP3-220ENST00000561381 PGFP49763 221 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 SLC5A3P53794 718 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 CLDN10P78369 228 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 LSM11P83369 360 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP3-220ENST00000561381 ZNF667Q5HYK9 610 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 EMC10Q5UCC4 262 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 ANO7Q6IWH7 933 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 ACOT1Q86TX2 421 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 FUKQ8N0W3 1084 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 ZMIZ2Q8NF64 920 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 TSTD1Q8NFU3 115 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 WBP2Q969T9 261 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 ZFRQ96KR1 1074 aaKnown RBP12.35□□□□□ -0.43
USP3-220ENST00000561381 CCSER2Q9H7U1 834 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 ZDHHC4Q9NPG8 344 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP3-220ENST00000561381 EXOC1Q9NV70 894 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 GMIPQ9P107 970 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 HMGXB4Q9UGU5 601 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 PCDHGA5Q9Y5G8 931 aa12.35□□□□□ -0.43
USP3-220ENST00000561381 A0A1B0GVL5 298 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 SLC9A3R1O14745 358 aaPredicted RBP12.34□□□□□ -0.43
USP3-220ENST00000561381 TM4SF5O14894 197 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 FOXD2O60548 495 aaPredicted RBP12.34□□□□□ -0.43
USP3-220ENST00000561381 AP1G2O75843 785 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 BEST1O76090 585 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 RTN3O95197 1032 aaPredicted RBP12.34□□□□□ -0.43
USP3-220ENST00000561381 NR3C1P04150 777 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 BCKDHBP21953 392 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 GBP1P32455 592 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 LIMK1P53667 647 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 CREB5Q02930 508 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 LY6G5CQ5SRR4 150 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 C1orf220Q5T0J3 134 aa12.34□□□□□ -0.43
USP3-220ENST00000561381 STPG1Q5TH74 334 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms