RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 MCAMP43121 646 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 SYKP43405 635 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 PIP4K2AP48426 406 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 METAP2P50579 478 aaKnown RBP eCLIP2.77□□□□□ -1.97
SPG11-223ENST00000560858 CLRN1P58418 232 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 TIMM10P62072 90 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 CEBPZQ03701 1054 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 MGAT5Q09328 741 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 SLC10A2Q12908 348 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 BMS1Q14692 1282 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 SF3A1Q15459 793 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 ZRSR1Q15695 479 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 C19orf54Q5BKX5 351 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 MUM1L1Q5H9M0 696 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 CT47A1Q5JQC4 288 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 TTC39AQ5SRH9 613 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 KAZNQ674X7 775 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 SLC9A4Q6AI14 798 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 FCRLBQ6BAA4 426 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 OTUD7BQ6GQQ9 843 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 ZCCHC8Q6NZY4 707 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 SYT10Q6XYQ8 523 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 KRBA2Q6ZNG9 492 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 MED25Q71SY5 747 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 CYB5R4Q7L1T6 521 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 RSRC2Q7L4I2 434 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 FGD2Q7Z6J4 655 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 GLB1L2Q8IW92 636 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 TRIML1Q8N9V2 468 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 SPATA20Q8TB22 786 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 MDM1Q8TC05 714 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 STAG1Q8WVM7 1258 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 DPF2Q92785 391 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 AIFM3Q96NN9 605 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 SDF4Q9BRK5 362 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 MRPL4Q9BYD3 311 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 PUS3Q9BZE2 481 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.77□□□□□ -1.97
SPG11-223ENST00000560858 PUS7LQ9H0K6 701 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 LY9Q9HBG7 655 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 TOMM22Q9NS69 142 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 ARGLU1Q9NWB6 273 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 TRMT1Q9NXH9 659 aaKnown RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 FBXO2Q9UK22 296 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 SPO11Q9Y5K1 396 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 MRFAP1Q9Y605 127 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 WNT6Q9Y6F9 365 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 GREB1LQ9C091 1923 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 MYH4Q9Y623 1939 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ITIH6Q6UXX5 1313 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 GOLGA8AA7E2F4 631 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 TMEM232C9JQI7 657 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 PRR23D1E9PI22 279 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 ZNF213O14771 459 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 CPLX1O14810 134 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 PJA2O43164 708 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ZBTB43O43298 467 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ZSCAN12O43309 604 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 STX10O60499 249 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ITGA10O75578 1167 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 GPANK1O95872 356 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 MMP1P03956 469 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 TPM1P09493 284 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 LTA4HP09960 611 aaKnown RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 PRR23D2P0DMB1 279 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 FGFR2P21802 821 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 UBASH3AP57075 661 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 HAND2P61296 217 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 SLC20A2Q08357 652 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 RAPGEF1Q13905 1077 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 MORC3Q14149 939 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 POSTNQ15063 836 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 TTF1Q15361 905 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 ETFDHQ16134 617 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 CCDC57Q2TAC2 916 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ARHGAP29Q52LW3 1261 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 HSP90AB3PQ58FF7 597 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 RILPL1Q5EBL4 403 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 TSTD2Q5T7W7 516 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ESRP1Q6NXG1 681 aaKnown RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 CPLX2Q6PUV4 134 aaKnown RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 SYNE3Q6ZMZ3 975 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ESPNLQ6ZVH7 1005 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 CHST3Q7LGC8 479 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 APTXQ7Z2E3 356 aaKnown RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 TC2NQ8N9U0 490 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 MLKLQ8NB16 471 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 MSANTD4Q8NCY6 345 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 DENND1AQ8TEH3 1009 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 FUBP3Q96I24 572 aaKnown RBP eCLIP2.76□□□□□ -1.97
SPG11-223ENST00000560858 NEUROD6Q96NK8 337 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 PANX2Q96RD6 677 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 MED15Q96RN5 788 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 ZSWIM1Q9BR11 485 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 FDXACB1Q9BRP7 624 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 NAA15Q9BXJ9 866 aaKnown RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 TEX13AQ9BXU3 409 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 SEMA4CQ9C0C4 833 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 FOXP1Q9H334 677 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 PIH1D3Q9NQM4 214 aaKnown RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms