RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 EFCAB2Q5VUJ9 269 aa3.53□□□□□ -1.84
SPG11-222ENST00000560435 DENND2CQ68D51 928 aa3.53□□□□□ -1.84
SPG11-222ENST00000560435 DCDC5Q6ZRR9 648 aa3.53□□□□□ -1.84
SPG11-222ENST00000560435 PTCHD4Q6ZW05 846 aa3.53□□□□□ -1.84
SPG11-222ENST00000560435 ZNF280BQ86YH2 543 aa3.53□□□□□ -1.84
SPG11-222ENST00000560435 FOXP4Q8IVH2 680 aaPredicted RBP3.53□□□□□ -1.84
SPG11-222ENST00000560435 WBP1Q96G27 269 aa3.53□□□□□ -1.84
SPG11-222ENST00000560435 NLRP4Q96MN2 994 aa3.53□□□□□ -1.84
SPG11-222ENST00000560435 SHTN1A0MZ66 631 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 PSMD9O00233 223 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 PLA2G2AP14555 144 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 KCNA3P22001 575 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 B4GALNT1Q00973 533 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 MLC1Q15049 377 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 ZIK1Q3SY52 487 aaPredicted RBP3.52□□□□□ -1.85
SPG11-222ENST00000560435 GFI1BQ5VTD9 330 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 VSTM1Q6UX27 236 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 MESP1Q9BRJ9 268 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 C17orf80Q9BSJ5 609 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 SNX15Q9NRS6 342 aa3.52□□□□□ -1.85
SPG11-222ENST00000560435 IFITM10A6NMD0 228 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 XRCC6P12956 609 aaKnown RBP eCLIP3.51□□□□□ -1.85
SPG11-222ENST00000560435 ATF7P17544 494 aaPredicted RBP3.51□□□□□ -1.85
SPG11-222ENST00000560435 DIO1P49895 249 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 MAP2K6P52564 334 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 KRT17Q04695 432 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 KCNB1Q14721 858 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 INPP5JQ15735 1006 aaPredicted RBP3.51□□□□□ -1.85
SPG11-222ENST00000560435 MGAT5BQ3V5L5 792 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 ZNF324BQ6AW86 544 aaPredicted RBP3.51□□□□□ -1.85
SPG11-222ENST00000560435 CAPRIN2Q6IMN6 1127 aaKnown RBP3.51□□□□□ -1.85
SPG11-222ENST00000560435 PNMA8AQ86V59 439 aaPredicted RBP3.51□□□□□ -1.85
SPG11-222ENST00000560435 RAB11FIP4Q86YS3 637 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 MIER2Q8N344 545 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 MAFAQ8NHW3 353 aaPredicted RBP3.51□□□□□ -1.85
SPG11-222ENST00000560435 WIPF2Q8TF74 440 aaPredicted RBP3.51□□□□□ -1.85
SPG11-222ENST00000560435 DNASE2BQ8WZ79 361 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 SLC25A28Q96A46 364 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 GJB4Q9NTQ9 266 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 TRHDEQ9UKU6 1024 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 TMX2Q9Y320 296 aa3.51□□□□□ -1.85
SPG11-222ENST00000560435 TTBK1Q5TCY1 1321 aaPredicted RBP3.5□□□□□ -1.85
SPG11-222ENST00000560435 KRTAP9-6A8MVA2 160 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 GABRDO14764 452 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 PDCP20941 246 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 TNFRSF8P28908 595 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 CDC25AP30304 524 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 CPA2P48052 419 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 PGGT1BP53609 377 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 UCP3P55916 312 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 YPEL5P62699 121 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 NKX6-1P78426 367 aaPredicted RBP3.5□□□□□ -1.85
SPG11-222ENST00000560435 STIM1Q13586 685 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 PLS1Q14651 629 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 MANEAQ5SRI9 462 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 PDXDC1Q6P996 788 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 ZNF793Q6ZN11 406 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 GAS2L3Q86XJ1 694 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 PRR18Q8N4B5 295 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 HS6ST2Q96MM7 605 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 LPAR3Q9UBY5 353 aa3.5□□□□□ -1.85
SPG11-222ENST00000560435 ZRANB2O95218 330 aaKnown RBP eCLIP3.49□□□□□ -1.85
SPG11-222ENST00000560435 SYF2O95926 243 aaKnown RBP3.49□□□□□ -1.85
SPG11-222ENST00000560435 IGKV3-20P01619 116 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 TACR3P29371 465 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 IL6STP40189 918 aaPredicted RBP3.49□□□□□ -1.85
SPG11-222ENST00000560435 SLC11A2P49281 568 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 PRKAG1P54619 331 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 ODF1Q14990 250 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 PRTGQ2VWP7 1150 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 CC2D1BQ5T0F9 858 aaKnown RBP3.49□□□□□ -1.85
SPG11-222ENST00000560435 CERCAMQ5T4B2 595 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 CUZD1Q86UP6 607 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 C16orf71Q8IYS4 520 aaPredicted RBP3.49□□□□□ -1.85
SPG11-222ENST00000560435 TMEM171Q8WVE6 324 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 ASB5Q8WWX0 329 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 CTHRC1Q96CG8 243 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 MED16Q9Y2X0 877 aa3.49□□□□□ -1.85
SPG11-222ENST00000560435 H3BUI4 141 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 ACOT8O14734 319 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 THP07101 528 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 CFHR3Q02985 330 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 KHDC1LQ5JSQ8 128 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 USP45Q70EL2 814 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 DDX42Q86XP3 938 aaKnown RBP eCLIP3.48□□□□□ -1.85
SPG11-222ENST00000560435 BPIFB1Q8TDL5 484 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 SLC35A4Q96G79 324 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 LMLNQ96KR4 655 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 SLC13A1Q9BZW2 595 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 ARHGAP39Q9C0H5 1083 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 SARS2Q9NP81 518 aaKnown RBP3.48□□□□□ -1.85
SPG11-222ENST00000560435 PCDHA6Q9UN73 950 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 DRG1Q9Y295 367 aaKnown RBP3.48□□□□□ -1.85
SPG11-222ENST00000560435 TRIP12Q14669 1992 aaPredicted RBP3.48□□□□□ -1.85
SPG11-222ENST00000560435 FER1L4A9Z1Z3 1794 aa3.48□□□□□ -1.85
SPG11-222ENST00000560435 TLDC2A0PJX2 215 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 MYO1CO00159 1063 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 SPTLC2O15270 562 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 CTIFO43310 598 aaKnown RBP3.47□□□□□ -1.85
SPG11-222ENST00000560435 TMPRSS11DO60235 418 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms