RNA–Protein interactions for RNA: ENST00000560297.5

USP8-209, Transcript of ubiquitin specific peptidase 8, human

TSL 5

Gene USP8, Length 652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP8-209	ENST00000560297	SUSD6	Q92537	303 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	FBXO32	Q969P5	355 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	CCDC42	Q96M95	316 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	GCNA	Q96QF7	691 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	PCDHB18P	Q96TA0	734 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	12.91	□□□□□ -0.34
USP8-209	ENST00000560297	SYNC	Q9H7C4	482 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	HCFC1R1	Q9NWW0	138 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	12.91	□□□□□ -0.34
USP8-209	ENST00000560297	TRPM5	Q9NZQ8	1165 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	ARHGAP20	Q9P2F6	1191 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	ADAMTS1	Q9UHI8	967 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	CYTH4	Q9UIA0	394 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	ZMYM5	Q9UJ78	669 aa		12.91	□□□□□ -0.34
USP8-209	ENST00000560297	MRPS23	Q9Y3D9	190 aa	Known RBP	12.91	□□□□□ -0.34
USP8-209	ENST00000560297	USP15	Q9Y4E8	981 aa	Predicted RBP	12.91	□□□□□ -0.34
USP8-209	ENST00000560297	NCAN	O14594	1321 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	DDX3X	O00571	662 aa	Known RBP eCLIP	12.9	□□□□□ -0.34	8e-13	■■□□□ 14.3
USP8-209	ENST00000560297	GABBR2	O75899	941 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	LCP1	P13796	627 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	PFKL	P17858	780 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	FSHR	P23945	695 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	GABRR2	P28476	465 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	EIF4A3	P38919	411 aa	Known RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	NSF	P46459	744 aa	Known RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	GABRB2	P47870	512 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	CENPC	Q03188	943 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	GOLGA8F	Q08AF8	430 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	GOLGA8DP	Q0D2H9	430 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	ADIG	Q0VDE8	80 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	IFRD2	Q12894	506 aa	Predicted RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	CBX2	Q14781	532 aa	Predicted RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	CLUL1	Q15846	466 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	ARHGAP15	Q53QZ3	475 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	SNX30	Q5VWJ9	437 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	GAREM2	Q75VX8	874 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	GPRIN1	Q7Z2K8	1008 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	TMTC1	Q8IUR5	882 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	SCUBE3	Q8IX30	993 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	STKLD1	Q8NE28	680 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	IRGQ	Q8WZA9	623 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	MRPS31	Q92665	395 aa	Known RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	C18orf8	Q96DM3	657 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	VCPIP1	Q96JH7	1222 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	CPXM1	Q96SM3	734 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	ATXN3L	Q9H3M9	355 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	DEF6	Q9H4E7	631 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	IL21	Q9HBE4	155 aa		12.9	□□□□□ -0.34
USP8-209	ENST00000560297	ZNF334	Q9HCZ1	680 aa	Predicted RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	TLR8	Q9NR97	1041 aa	Known RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	CHORDC1	Q9UHD1	332 aa	Predicted RBP	12.9	□□□□□ -0.34
USP8-209	ENST00000560297	MTCL1	Q9Y4B5	1905 aa	Known RBP	12.9	□□□□□ -0.35
USP8-209	ENST00000560297	CLUH	O75153	1309 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	PLXNA3	P51805	1871 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	ZNF840P	A6NDX5	716 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297		E5RJQ4	531 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	MBTPS2	O43462	519 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	RTN2	O75298	545 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	CALB1	P05937	261 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	PLEK	P08567	350 aa	Predicted RBP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	USP17L7	P0C7H9	530 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	FECH	P22830	423 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	MMP8	P22894	467 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	DDX6	P26196	483 aa	Known RBP eCLIP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	NTHL1	P78549	312 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	MRPS5	P82675	430 aa	Known RBP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	ZNF268	Q14587	947 aa	Predicted RBP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	ASTE1	Q2TB18	679 aa	Predicted RBP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	PTPN20	Q4JDL3	420 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	PRSS36	Q5K4E3	855 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	PHF13	Q86YI8	300 aa	Predicted RBP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	CCDC170	Q8IYT3	715 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	GOLGA1	Q92805	767 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	CHP1	Q99653	195 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	TRIM62	Q9BVG3	475 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	ULBP1	Q9BZM6	244 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	ADAM22	Q9P0K1	906 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	WDR35	Q9P2L0	1181 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	STRIP2	Q9ULQ0	834 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	12.89	□□□□□ -0.35
USP8-209	ENST00000560297	ATG2A	Q2TAZ0	1938 aa		12.89	□□□□□ -0.35
USP8-209	ENST00000560297		A0A1W2PRU2	124 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	GRXCR2	A6NFK2	248 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	PAPSS1	O43252	624 aa	Predicted RBP	12.88	□□□□□ -0.35
USP8-209	ENST00000560297	AKR1B10	O60218	316 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	FTL	P02792	175 aa	Predicted RBP	12.88	□□□□□ -0.35
USP8-209	ENST00000560297	ERBB2	P04626	1255 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	GLI1	P08151	1106 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	ZDHHC11B	P0C7U3	371 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	RALA	P11233	206 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	SCNN1A	P37088	669 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	CCR2	P41597	374 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	TUB	P50607	506 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	DAOA	P59103	153 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	SMAD2	Q15796	467 aa	Known RBP	12.88	□□□□□ -0.35
USP8-209	ENST00000560297	SLC18A3	Q16572	532 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	EFHC1	Q5JVL4	640 aa		12.88	□□□□□ -0.35
USP8-209	ENST00000560297	PTCRA	Q6ISU1	281 aa	Predicted RBP	12.88	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms