RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 C11orf70Q9BRQ4 267 aa10.12□□□□□ -0.79
CUX1-216ENST00000558469 DESI2Q9BSY9 194 aa10.12□□□□□ -0.79
CUX1-216ENST00000558469 MIS12Q9H081 205 aa10.12□□□□□ -0.79
CUX1-216ENST00000558469 PNPLA8Q9NP80 782 aa10.12□□□□□ -0.79
CUX1-216ENST00000558469 CYLDQ9NQC7 956 aa10.12□□□□□ -0.79
CUX1-216ENST00000558469 MAGED2Q9UNF1 606 aaPredicted RBP10.12□□□□□ -0.79
CUX1-216ENST00000558469 PCDHA13Q9Y5I0 950 aa10.12□□□□□ -0.79
CUX1-216ENST00000558469 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.12□□□□□ -0.79
CUX1-216ENST00000558469 SZT2Q5T011 3432 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 ANKRD62A6NC57 917 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 GOLGA8SH3BPF8 625 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 LINC01565O15544 149 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 RFPL2O75678 378 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 ZMYND10O75800 440 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 RTN3O95197 1032 aaPredicted RBP10.11□□□□□ -0.79
CUX1-216ENST00000558469 CALB1P05937 261 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 USP17L7P0C7H9 530 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 CSH1P0DML2 217 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 CSH2P0DML3 217 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 MAGEA1P43355 309 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 GABRB2P47870 512 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 USP46P62068 366 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 KRT83P78385 493 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 PTP4A2Q12974 167 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 KCNC3Q14003 757 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 OR6B2Q6IFH4 312 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 FAM183BPQ6ZVS7 135 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 RTL10Q7L3V2 364 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 XYLT1Q86Y38 959 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 SIX6OS1Q8N1H7 587 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 ELMOD1Q8N336 334 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 DEFB123Q8N688 67 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 EFHBQ8N7U6 833 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 CLEC4CQ8WTT0 213 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 MYLIPQ8WY64 445 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 NDRG1Q92597 394 aaKnown RBP10.11□□□□□ -0.79
CUX1-216ENST00000558469 CASP10Q92851 521 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 ZNF653Q96CK0 615 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 VCPIP1Q96JH7 1222 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 CEP295NLQ96MC4 621 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 ZNF512Q96ME7 567 aaPredicted RBP10.11□□□□□ -0.79
CUX1-216ENST00000558469 PACSIN1Q9BY11 444 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 MFRPQ9BY79 579 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 ULBP1Q9BZM6 244 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 THAP2Q9H0W7 228 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 FBXO44Q9H4M3 255 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 LUC7LQ9NQ29 371 aaKnown RBP10.11□□□□□ -0.79
CUX1-216ENST00000558469 MYO1AQ9UBC5 1043 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 STRIP2Q9ULQ0 834 aa10.11□□□□□ -0.79
CUX1-216ENST00000558469 REXO2Q9Y3B8 237 aaKnown RBP10.11□□□□□ -0.79
CUX1-216ENST00000558469 HELZP42694 1942 aaKnown RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 CCDC195A0A1B0GUA6 201 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 PAPSS1O43252 624 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 FBXO21O94952 628 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 GLP2RO95838 553 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 ZBED1O96006 694 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 H2AFZP0C0S5 128 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 SRGAP2BP0DMP2 458 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 MYBL1P10243 752 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 RRM1P23921 792 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 YWHAQP27348 245 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 GPC5P78333 572 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 ADAM15Q13444 863 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 ZNF268Q14587 947 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 EP400NLQ6ZTU2 488 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 H2AFVQ71UI9 128 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 DNAJB7Q7Z6W7 309 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 KIAA1328Q86T90 577 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 ITIH5Q86UX2 942 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 C12orf76Q8N812 135 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 CTNNBL1Q8WYA6 563 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 FBXO32Q969P5 355 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 PSMG2Q969U7 264 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 TRIM44Q96DX7 344 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 TRIM11Q96F44 468 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 CDX2Q99626 313 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 CNGB3Q9NQW8 809 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 DZANK1Q9NVP4 752 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 COMMD8Q9NX08 183 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 ZDHHC7Q9NXF8 308 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 IL37Q9NZH6 218 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 EHD2Q9NZN4 543 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 CNOT8Q9UFF9 292 aaKnown RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 CHORDC1Q9UHD1 332 aaPredicted RBP10.1□□□□□ -0.79
CUX1-216ENST00000558469 TFR2Q9UP52 801 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 ASB3Q9Y575 518 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 ADGRG1Q9Y653 693 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 USP3Q9Y6I4 520 aa10.1□□□□□ -0.79
CUX1-216ENST00000558469 RCCD1A6NED2 376 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 YJEFN3A6XGL0 299 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 E7ENQ6 273 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 XYLBO75191 536 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 GRAP2O75791 330 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 GJB6O95452 261 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 HNRNPA1P09651 372 aaKnown RBP eCLIP10.09□□□□□ -0.79
CUX1-216ENST00000558469 CCDC175P0C221 793 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 TMEM253P0C7T8 217 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 HMGA1P17096 107 aaKnown RBP10.09□□□□□ -0.79
CUX1-216ENST00000558469 PTPN2P17706 415 aa10.09□□□□□ -0.79
CUX1-216ENST00000558469 HOXA9P31269 272 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms