RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TTLL2Q9BWV7 592 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 CD93Q9NPY3 652 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 TMEM30AQ9NV96 361 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 DNAAF2Q9NVR5 837 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 RBAKQ9NYW8 714 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 TRPM5Q9NZQ8 1165 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 CFAP97Q9P2B7 532 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ITGA11Q9UKX5 1188 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 NME7Q9Y5B8 376 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 MAST4O15021 2626 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 A0A0A0MRY4 1105 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 GOLGA8IPA6NC78 632 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 GOLGA8JA6NMD2 632 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 F8VP50 259 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ARHGAP33O14559 1287 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC9A3R1O14745 358 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 TRIM24O15164 1050 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC26A4O43511 780 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 SH3BP5O60239 455 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 GJB3O75712 270 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ZIC2O95409 532 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ADH1CP00326 375 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 KRT19P08727 400 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 HOXB2P14652 356 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ABCD1P33897 745 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 GRIK1P39086 918 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 GRIA2P42262 883 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 WASP42768 502 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 LHX1P48742 406 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 CASP5P51878 434 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 CACNA2D1P54289 1103 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 LY6G5CQ5SRR4 150 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 VSTM1Q6UX27 236 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 C4orf50Q6ZRC1 276 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ZNF720Q7Z2F6 126 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 LIMS2Q7Z4I7 341 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ETFBKMTQ8IXQ9 262 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 CSGALNACT2Q8N6G5 542 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ZNF513Q8N8E2 541 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 KIAA1958Q8N8K9 716 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 CEP76Q8TAP6 659 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 MDM1Q8TC05 714 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ADAMTS14Q8WXS8 1223 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 LARP4BQ92615 738 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 HVCN1Q96D96 273 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 PCED1BQ96HM7 432 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ZFRQ96KR1 1074 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ZSCAN31Q96LW9 406 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 AK8Q96MA6 479 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 HSPA12BQ96MM6 686 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 STRA6Q9BX79 667 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 FGFBP2Q9BYJ0 223 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 PDE11AQ9HCR9 933 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 CD248Q9HCU0 757 aa8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 MAGEC2Q9UBF1 373 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 ARID1BQ8NFD5 2236 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-214ENST00000557507 COL6A6A6NMZ7 2263 aa8.71□□□□□ -1.01
CCDC88C-214ENST00000557507 A0A1W2PQF6 199 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 GOLGA6L22H0YM25 854 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 TULP3O75386 442 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 ABL1P00519 1130 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 MBL2P11226 248 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 NDUFV2P19404 249 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 ANXA13P27216 316 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 RDXP35241 583 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 UBA7P41226 1012 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 TNFRSF4P43489 277 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 NOP14P78316 857 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 NUCB2P80303 420 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 CYP27A1Q02318 531 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 IFRD2Q12894 506 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 TAF10Q12962 218 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 BYSLQ13895 437 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 POSTNQ15063 836 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 TRIP6Q15654 476 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 EGFLAMQ63HQ2 1017 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 SLC36A4Q6YBV0 504 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 CCNI2Q6ZMN8 369 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 DYMQ7RTS9 669 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 RABEPKQ7Z6M1 372 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 NAXDQ8IW45 347 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 NAT16Q8N8M0 369 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 TRIML1Q8N9V2 468 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 TERB1Q8NA31 727 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 OR5B17Q8NGF7 314 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 RASSF8Q8NHQ8 419 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 WBP2Q969T9 261 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 GBP4Q96PP9 640 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 ACOX2Q99424 681 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 CBWD1Q9BRT8 395 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 SLC6A17Q9H1V8 727 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 CCDC86Q9H6F5 360 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 TBC1D7Q9P0N9 293 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 CDH9Q9ULB4 789 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 CYP8B1Q9UNU6 501 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 RAXQ9Y2V3 346 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 DOCK9Q9BZ29 2069 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 ZNF462Q96JM2 2506 aa8.71□□□□□ -1.02
CCDC88C-214ENST00000557507 CFAP46Q8IYW2 2715 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms