RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 MPLP40238 635 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 LIMK1P53667 647 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 SGSM1Q2NKQ1 1148 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 GAB4Q2WGN9 574 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 PLA2G2CQ5R387 149 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 HECTD3Q5T447 861 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 RHBDF2Q6PJF5 856 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 FAM35AQ86V20 835 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 SCAMP5Q8TAC9 235 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 TMEM174Q8WUU8 243 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 ELMO3Q96BJ8 720 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 SMARCD1Q96GM5 515 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 CNTNAP3BQ96NU0 1288 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 PNKPQ96T60 521 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 CNTNAP3Q9BZ76 1288 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 KCTD10Q9H3F6 313 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 DMAP1Q9NPF5 467 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 VPS45Q9NRW7 570 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 TBC1D14Q9P2M4 693 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 USP25Q9UHP3 1055 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 MMP17Q9ULZ9 603 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 ABCA7Q8IZY2 2146 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 MYO18AQ92614 2054 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 A0A1B0GVL5 298 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 E2F8A0AVK6 867 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 TNFRSF10BO14763 440 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 COCHO43405 550 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 AP1G2O75843 785 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 KAT7O95251 611 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 NR3C1P04150 777 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 RPN1P04843 607 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 APODP05090 189 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 MYL1P05976 194 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 ADH5P11766 374 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 PFKFB1P16118 471 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 EIF2DP41214 584 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 SLC6A11P48066 632 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 SLC5A3P53794 718 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 DLG4P78352 724 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 MRPS21P82921 87 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 CREB5Q02930 508 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 USP39Q53GS9 565 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 SNX30Q5VWJ9 437 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 CEP135Q66GS9 1140 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 ANO7Q6IWH7 933 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 PAQR9Q6ZVX9 377 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 ACOT1Q86TX2 421 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 C11orf74Q86VG3 221 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 TTC30AQ86WT1 665 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 FUKQ8N0W3 1084 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 CCDC33Q8N5R6 958 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 OTUB2Q96DC9 234 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 TPSD1Q9BZJ3 242 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 SDCBP2Q9H190 292 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 SMOC1Q9H4F8 434 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 KRT82Q9NSB4 513 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 RXFP3Q9NSD7 469 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 COMMD8Q9NX08 183 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 INVSQ9Y283 1065 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 FRMD4BQ9Y2L6 1034 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 SH3BP1Q9Y3L3 701 aa11.74□□□□□ -0.53
CCDC88C-213ENST00000557455 LAMA1P25391 3075 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 ANTXRLA6NF34 631 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 IKBKBO14920 756 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CALUO43852 315 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 ALDH1A2O94788 518 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CAVIN2O95810 425 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CCDC130P13994 396 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 TRIM21P19474 475 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CMA1P23946 247 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 TIE1P35590 1138 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 TUBP50607 506 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 GAD2Q05329 585 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 ORC1Q13415 861 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CRY1Q16526 586 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 ZACNQ401N2 412 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 LY6G5CQ5SRR4 150 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 STPG1Q5TH74 334 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 BTBD8Q5XKL5 378 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 SV2AQ7L0J3 742 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 UNC93AQ86WB7 457 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 RASSF3Q86WH2 238 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CRYBG2Q8N1P7 616 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 ALLCQ8N6M5 410 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 SLC2A14Q8TDB8 520 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 TMC2Q8TDI7 906 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CEP192Q8TEP8 1941 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 TAF4BQ92750 862 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CCDC47Q96A33 483 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 ZFRQ96KR1 1074 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CNOT6LQ96LI5 555 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 SPATA32Q96LK8 384 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 SMOQ99835 787 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 NACA2Q9H009 215 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 CCSER2Q9H7U1 834 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 ARHGEF4Q9NR80 690 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 IL37Q9NZH6 218 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 GMIPQ9P107 970 aa11.73□□□□□ -0.53
CCDC88C-213ENST00000557455 A0A0A0MRY4 1105 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms