RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 SLC7A9P82251 487 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 PLCB2Q00722 1185 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 PRKCQQ04759 706 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 PDE4CQ08493 712 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 GOLGA7BQ2TAP0 167 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 RAB41Q5JT25 222 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 CC2D1AQ6P1N0 951 aaPredicted RBP11.27□□□□□ -0.61
LINC00239-201ENST00000556973 GJB7Q6PEY0 223 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 GPRIN1Q7Z2K8 1008 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 CCDC186Q7Z3E2 898 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 PIGZQ86VD9 579 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 TTC30AQ86WT1 665 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 AOPEPQ8N6M6 819 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 KIAA1958Q8N8K9 716 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 UBA3Q8TBC4 463 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 CSGALNACT1Q8TDX6 532 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 TFAP2BQ92481 460 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 SIX2Q9NPC8 291 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 ARHGEF3Q9NR81 526 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 GKN1Q9NS71 199 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 TAB2Q9NYJ8 693 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 DNAJC12Q9UKB3 198 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 ARHGAP26Q9UNA1 814 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.27□□□□□ -0.61
LINC00239-201ENST00000556973 CCL26Q9Y258 94 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 TECTAO75443 2155 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 KIF26AQ9ULI4 1882 aaPredicted RBP11.26□□□□□ -0.61
LINC00239-201ENST00000556973 SYCE3A1L190 88 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 ARNTLO00327 626 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 PDGFBP01127 241 aaPredicted RBP11.26□□□□□ -0.61
LINC00239-201ENST00000556973 SETSIPP0DME0 302 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 ZNF18P17022 549 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 RFX1P22670 979 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 AVPR2P30518 371 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 PLA2G4AP47712 749 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 ZNF165P49910 485 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 APBA1Q02410 837 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 MLF2Q15773 248 aaPredicted RBP11.26□□□□□ -0.61
LINC00239-201ENST00000556973 PKDCCQ504Y2 493 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 FKBP15Q5T1M5 1219 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 KLHDC7AQ5VTJ3 777 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 PM20D1Q6GTS8 502 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 ASTLQ6HA08 431 aaPredicted RBP11.26□□□□□ -0.61
LINC00239-201ENST00000556973 DPY19L2P1Q6NXN4 242 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 DHX40Q8IX18 779 aaKnown RBP11.26□□□□□ -0.61
LINC00239-201ENST00000556973 ZNF276Q8N554 614 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 FLCNQ8NFG4 579 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 SLC35F5Q8WV83 523 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 ZNF606Q8WXB4 792 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 KCTD13Q8WZ19 329 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 SHC3Q92529 594 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 NELL2Q99435 816 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 HSD3B7Q9H2F3 369 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 HEBP1Q9NRV9 189 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 GMIPQ9P107 970 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 COL4A2P08572 1712 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 TTC28Q96AY4 2481 aa11.26□□□□□ -0.61
LINC00239-201ENST00000556973 KANSL1LA0AUZ9 987 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 BECN2A8MW95 431 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 LEFTY2O00292 366 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 FOXN3O00409 490 aaPredicted RBP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 MAN2B1O00754 1011 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 CYP26A1O43174 497 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 COCHO43405 550 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 TLR5O60602 858 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 CAVIN2O95810 425 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 MBL2P11226 248 aaPredicted RBP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 BRD2P25440 801 aaKnown RBP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 GNA15P30679 374 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 ATP5C1P36542 298 aaKnown RBP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 USP8P40818 1118 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 TKTL1P51854 596 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 NUBP1P53384 320 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 COPB1P53618 953 aaKnown RBP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 BPIFB4P59827 614 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 ZXDBP98169 803 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 PTK2Q05397 1052 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 MTF1Q14872 753 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 PDGFRLQ15198 375 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 ZNF77Q15935 545 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 MEA1Q16626 185 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 IER5LQ5T953 404 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 C1orf228Q6PIY5 440 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 ZNF852Q6ZMS4 543 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 TADA2BQ86TJ2 420 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 DDX42Q86XP3 938 aaKnown RBP eCLIP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 SCML4Q8N228 414 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 ARHGAP18Q8N392 663 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 SH3RF2Q8TEC5 729 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 MSANTD3Q96H12 275 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 ZFYVE19Q96K21 471 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 FAM83CQ9BQN1 747 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 ZSWIM1Q9BR11 485 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 DDX23Q9BUQ8 820 aaKnown RBP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 OSBPL6Q9BZF3 934 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 NACA2Q9H009 215 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 C8orf33Q9H7E9 229 aaPredicted RBP11.25□□□□□ -0.61
LINC00239-201ENST00000556973 CCSER2Q9H7U1 834 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 LRRC4Q9HBW1 653 aa11.25□□□□□ -0.61
LINC00239-201ENST00000556973 PLCB1Q9NQ66 1216 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms