RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 KARSQ15046 597 aaKnown RBP10.77□□□□□ -0.69
SCFD1-220ENST00000556486 TLR1Q15399 786 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 TAF12Q16514 161 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 COL28A1Q2UY09 1125 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 C11orf91Q3C1V1 193 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 MGAT5BQ3V5L5 792 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 C2orf27AQ580R0 203 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 TRIM61Q5EBN2 209 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 TXNDC8Q6A555 127 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 JADE1Q6IE81 842 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 SLFN12LQ6IEE8 588 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 ARMCX5Q6P1M9 558 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 Q6ZNB5 142 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 DPH6Q7L8W6 267 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 ITIH5Q86UX2 942 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 ETFBKMTQ8IXQ9 262 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 CMTM8Q8IZV2 173 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 CCDC33Q8N5R6 958 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 MYCT1Q8N699 235 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 TSTD1Q8NFU3 115 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 OR2I1PQ8NGU4 316 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 OR10T2Q8NGX3 314 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 C2orf15Q8WU43 125 aaKnown RBP10.77□□□□□ -0.69
SCFD1-220ENST00000556486 EDEM1Q92611 657 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 RAD54LQ92698 747 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 USP13Q92995 863 aaPredicted RBP10.77□□□□□ -0.69
SCFD1-220ENST00000556486 HVCN1Q96D96 273 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 GCNAQ96QF7 691 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 PLIN2Q99541 437 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 MSTO1Q9BUK6 570 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 STRA6Q9BX79 667 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 MSRB2Q9Y3D2 182 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 NEUROG3Q9Y4Z2 214 aa10.77□□□□□ -0.69
SCFD1-220ENST00000556486 CACNA1EQ15878 2313 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 TCHHQ07283 1943 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 SERTM1A2A2V5 107 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PDGFAP04085 211 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 NFICP08651 508 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 GJA4P35212 333 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 DDIT3P35638 169 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 AVPR1AP37288 418 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 GPR15P49685 360 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PRR20EP86478 221 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PRR20CP86479 221 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PRR20DP86480 221 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PRR20BP86481 221 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PRR20AP86496 221 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 BFSP1Q12934 665 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 TMEM132DQ14C87 1099 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PTPAQ15257 358 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 TEAD4Q15561 434 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 SDHAF4Q5VUM1 108 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 SYT13Q7L8C5 426 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 PDZD3Q86UT5 571 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 TMEFF1Q8IYR6 380 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 DEFB119Q8N690 84 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 LARP4BQ92615 738 aaKnown RBP10.76□□□□□ -0.69
SCFD1-220ENST00000556486 BBC3Q96PG8 261 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-220ENST00000556486 GTPBP2Q9BX10 602 aaKnown RBP10.76□□□□□ -0.69
SCFD1-220ENST00000556486 ZCWPW1Q9H0M4 648 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 ACBD3Q9H3P7 528 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 ZDHHC4Q9NPG8 344 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 TMEM74BQ9NUR3 256 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 SEL1LQ9UBV2 794 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 MBD1Q9UIS9 605 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-220ENST00000556486 MAGED2Q9UNF1 606 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-220ENST00000556486 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-220ENST00000556486 WNT6Q9Y6F9 365 aa10.76□□□□□ -0.69
SCFD1-220ENST00000556486 MORC2Q9Y6X9 1032 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-220ENST00000556486 SCN1AP35498 2009 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 TBCAO75347 108 aaKnown RBP10.75□□□□□ -0.69
SCFD1-220ENST00000556486 CFIP05156 583 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 HNRNPLP14866 589 aaKnown RBP eCLIP10.75□□□□□ -0.694e-7■□□□□ 9.6
SCFD1-220ENST00000556486 ENGP17813 658 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 DRD1P21728 446 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 CDC25CP30307 473 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 PTGER3P43115 390 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 GRIN1Q05586 938 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 VEPH1Q14D04 833 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 USP39Q53GS9 565 aaKnown RBP10.75□□□□□ -0.69
SCFD1-220ENST00000556486 CC2D1AQ6P1N0 951 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-220ENST00000556486 CRELD2Q6UXH1 353 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-220ENST00000556486 ZNF720Q7Z2F6 126 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 TMEM150AQ86TG1 271 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 PROSER1Q86XN7 944 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 SFTPA1Q8IWL2 248 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 ALDH16A1Q8IZ83 802 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 MDGA1Q8NFP4 955 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 SPPL2BQ8TCT7 592 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 FBF1Q8TES7 1133 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 HNRNPLLQ8WVV9 542 aaKnown RBP10.75□□□□□ -0.69
SCFD1-220ENST00000556486 CD101Q93033 1021 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 SLC32A1Q9H598 525 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 TRPC7Q9HCX4 862 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 STK17AQ9UEE5 414 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 EBF1Q9UH73 591 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 AGO2Q9UKV8 859 aaKnown RBP10.75□□□□□ -0.69
SCFD1-220ENST00000556486 SMC3Q9UQE7 1217 aa10.75□□□□□ -0.69
SCFD1-220ENST00000556486 CEP192Q8TEP8 1941 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms