RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 USP27XA6NNY8 438 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 C2CD2LO14523 706 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 CYB561D2O14569 222 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 ZNF263O14978 683 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 KIF5CO60282 957 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 LILRB3O75022 631 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 B3GAT3O94766 335 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 GALTP07902 379 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 MMEP08473 750 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 VDRP11473 427 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 CD19P15391 556 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 CHRNB2P17787 502 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 SPINK2P20155 84 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 RAD23BP54727 409 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 FMO1Q01740 532 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 DSC1Q08554 894 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 MTAPQ13126 283 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 SOWAHAQ2M3V2 549 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 ADGRF2Q8IZF7 708 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM130Q8N3G9 435 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 KDF1Q8NAX2 398 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-208ENST00000553868 OR6B3Q8NGW1 331 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 DDX1Q92499 740 aaKnown RBP15.3■□□□□ 0.04
SHMT2-208ENST00000553868 LZTFL1Q9NQ48 299 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 TBC1D13Q9NVG8 400 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 DSEQ9UL01 958 aa15.3■□□□□ 0.04
SHMT2-208ENST00000553868 ASH1LQ9NR48 2969 aaKnown RBP15.29■□□□□ 0.04
SHMT2-208ENST00000553868 AKAP13Q12802 2813 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 CARNS1A5YM72 827 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM189-UBE2V1I3L0A0 370 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 TM4SF5O14894 197 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 PJA2O43164 708 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 TRAPPC3O43617 180 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 RTN2O75298 545 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 LSM8O95777 96 aaKnown RBP15.29■□□□□ 0.04
SHMT2-208ENST00000553868 ODC1P11926 461 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 TDGF1P13385 188 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 WARSP23381 471 aaKnown RBP15.29■□□□□ 0.04
SHMT2-208ENST00000553868 LHX1P48742 406 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 SLC11A1P49279 550 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 AARSP49588 968 aaKnown RBP eCLIP15.29■□□□□ 0.04
SHMT2-208ENST00000553868 NDST1P52848 882 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 SRSF5Q13243 272 aaKnown RBP15.29■□□□□ 0.04
SHMT2-208ENST00000553868 ZNF394Q53GI3 561 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 LIMS2Q7Z4I7 341 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 METTL23Q86XA0 190 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 ZNF606Q8WXB4 792 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 CTNNBL1Q8WYA6 563 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-208ENST00000553868 CLDN23Q96B33 292 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 TRIM11Q96F44 468 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 TNIP3Q96KP6 325 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 SENP8Q96LD8 212 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 OSBPL6Q9BZF3 934 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 ZNF518BQ9C0D4 1074 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 RXFP3Q9NSD7 469 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 MYO1AQ9UBC5 1043 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 NENFQ9UMX5 172 aa15.29■□□□□ 0.04
SHMT2-208ENST00000553868 SDK1Q7Z5N4 2213 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 BTNL10A8MVZ5 291 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 A8MXQ7 604 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 LRP3O75074 770 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 GNL1P36915 607 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-208ENST00000553868 PRKCQQ04759 706 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 FZD5Q13467 585 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 IFI16Q16666 785 aaKnown RBP15.28■□□□□ 0.04
SHMT2-208ENST00000553868 CLEC16AQ2KHT3 1053 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 SGO2Q562F6 1265 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 ACAD10Q6JQN1 1059 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 NYAP1Q6ZVC0 841 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 COLGALT2Q8IYK4 626 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 SLC4A11Q8NBS3 891 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM35BQ8NCS4 154 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 WHAMMQ8TF30 809 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 CALR3Q96L12 384 aaKnown RBP15.28■□□□□ 0.04
SHMT2-208ENST00000553868 C16orf45Q96MC5 204 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-208ENST00000553868 HEXIM2Q96MH2 286 aaKnown RBP15.28■□□□□ 0.04
SHMT2-208ENST00000553868 MRPL45Q9BRJ2 306 aaKnown RBP15.28■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM175Q9BSA9 504 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 COLEC11Q9BWP8 271 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 ELOVL4Q9GZR5 314 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 ISCUQ9H1K1 167 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 PIDD1Q9HB75 910 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 ACP6Q9NPH0 428 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHMT2-208ENST00000553868 PCDHGC3Q9UN70 934 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 L1RE1Q9UN81 338 aa15.28■□□□□ 0.04
SHMT2-208ENST00000553868 DMXL2Q8TDJ6 3036 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 TRIP11Q15643 1979 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 ANKRD62A6NC57 917 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 KIF4AO95239 1232 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 FTLP02792 175 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 TMEM253P0C7T8 217 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 BRD2P25440 801 aaKnown RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 ARHGAP25P42331 645 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 NSFP46459 744 aaKnown RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 OR1G1P47890 313 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 SF3A2Q15428 464 aaKnown RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 CCDC6Q16204 474 aa15.27■□□□□ 0.04
SHMT2-208ENST00000553868 DNTTIP2Q5QJE6 756 aaKnown RBP15.27■□□□□ 0.04
SHMT2-208ENST00000553868 TPRG1Q6ZUI0 275 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms