RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 IL1RAPL1Q9NZN1 696 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.79□□□□□ -0.36
SHMT2-207ENST00000553837 COMMD3-BMI1R4GMX3 469 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 GYG2O15488 501 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 TBX10O75333 385 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 GAS8O95995 478 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 LYNP07948 512 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 ZSCAN5DPP0CG00 497 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 ETS1P14921 441 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CLCN3P51790 818 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 ORC1Q13415 861 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 TMED2Q15363 201 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 ACSBG2Q5FVE4 666 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 DENND1BQ6P3S1 775 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CCDC62Q6P9F0 684 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CEP128Q6ZU80 1094 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 TRABD2AQ86V40 505 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 RELL1Q8IUW5 271 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 BBOF1Q8ND07 529 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 FAM167AQ96KS9 214 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 SPATA33Q96N06 139 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 IMPG2Q9BZV3 1241 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 MIS12Q9H081 205 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CYLDQ9NQC7 956 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 EURLQ9NYK6 297 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CIDEBQ9UHD4 219 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 IP6K2Q9UHH9 426 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 DNPEPQ9ULA0 475 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 DICER1Q9UPY3 1922 aaKnown RBP12.78□□□□□ -0.36
SHMT2-207ENST00000553837 DNAJC25-GNG10A0A024R161 153 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 SPAG7O75391 227 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 E2F6O75461 281 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 YY1P25490 414 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 AP3M2P53677 418 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 MXD4Q14582 209 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-207ENST00000553837 CTC1Q2NKJ3 1217 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 GJC2Q5T442 439 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-207ENST00000553837 VPS52Q8N1B4 723 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 SMC1BQ8NDV3 1235 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 STKLD1Q8NE28 680 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 SPOCK2Q92563 424 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 MCUR1Q96AQ8 359 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 SDCBP2Q9H190 292 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 FZD8Q9H461 694 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 TMEM165Q9HC07 324 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 METTL5Q9NRN9 209 aaKnown RBP12.78□□□□□ -0.36
SHMT2-207ENST00000553837 SENP1Q9P0U3 644 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 SIX4Q9UIU6 781 aa12.78□□□□□ -0.36
SHMT2-207ENST00000553837 A8MXQ7 604 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 NOP56O00567 594 aaKnown RBP12.77□□□□□ -0.36
SHMT2-207ENST00000553837 LIASO43766 372 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 KRT1P04264 644 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 ABHD2P08910 425 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 CXCL8P10145 99 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 TROVE2P10155 538 aaKnown RBP eCLIP12.77□□□□□ -0.36
SHMT2-207ENST00000553837 CDH8P55286 799 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 MBTD1Q05BQ5 628 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 LSAMPQ13449 338 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 ZNF699Q32M78 642 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 ATF7IP2Q5U623 682 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 IZUMO3Q5VZ72 239 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 DNAJC24Q6P3W2 148 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 MPZL3Q6UWV2 235 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 ZNF365Q70YC5 407 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 PLPPR4Q7Z2D5 763 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 ZBTB8OSQ8IWT0 167 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 ARFGAP1Q8N6T3 406 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 NSL1Q96IY1 281 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 HAPLN3Q96S86 360 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 SMC6Q96SB8 1091 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 RNPEPQ9H4A4 650 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 TRABDQ9H4I3 376 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 GALNT8Q9NY28 637 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 NXF1Q9UBU9 619 aaKnown RBP12.77□□□□□ -0.36
SHMT2-207ENST00000553837 ANGPTL2Q9UKU9 493 aa12.77□□□□□ -0.36
SHMT2-207ENST00000553837 SBF1O95248 1867 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 INO80B-WBP1J3KQ70 363 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 GPR25O00155 361 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 ACKR2O00590 384 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 LSM8O95777 96 aaKnown RBP12.77□□□□□ -0.37
SHMT2-207ENST00000553837 CALB1P05937 261 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 UBTFL6P0CB48 400 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-207ENST00000553837 CCDC166P0CW27 439 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 ATF7P17544 494 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-207ENST00000553837 CDH5P33151 784 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-207ENST00000553837 GJA8P48165 433 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 TRPC3Q13507 836 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 P3H1Q32P28 736 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 WDR72Q3MJ13 1102 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 PTPN20Q4JDL3 420 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 LIN52Q52LA3 116 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 SH2D4BQ5SQS7 431 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 EFCAB12Q6NXP0 572 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 SPOCD1Q6ZMY3 1216 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 OTOAQ7RTW8 1153 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 RCOR2Q8IZ40 523 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 KIAA0319LQ8IZA0 1049 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 TMEM35BQ8NCS4 154 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 HAUS1Q96CS2 278 aa12.77□□□□□ -0.37
SHMT2-207ENST00000553837 C9orf72Q96LT7 481 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms