RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 CDK17Q00537 523 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 GCNT1Q02742 428 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 CCDC85BQ15834 202 aaPredicted RBP5.36□□□□□ -1.55
VTI1B-202ENST00000553619 TRIM60Q495X7 471 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 CBWD6Q4V339 395 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 EPC2Q52LR7 807 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 SEZ6Q53EL9 994 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 PLEKHG4Q58EX7 1191 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 XKR4Q5GH76 650 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 ZNF667Q5HYK9 610 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 CBWD3Q5JTY5 395 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 CBWD5Q5RIA9 395 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 C1orf220Q5T0J3 134 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 UBXN11Q5T124 520 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 RASIP1Q5U651 963 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 JADE1Q6IE81 842 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 PDXDC1Q6P996 788 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 SLC23A3Q6PIS1 610 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 TRIM65Q6PJ69 517 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 ALKAL1Q6UXT8 129 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 C15orf39Q6ZRI6 1047 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 RRAGAQ7L523 313 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 C12orf40Q86WS4 652 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 CCDC170Q8IYT3 715 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 ZSWIM2Q8NEG5 633 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 DBF4BQ8NFT6 615 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 LMO3Q8TAP4 145 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 URGCPQ8TCY9 931 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 PLEKHO2Q8TD55 490 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 SNX27Q96L92 541 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 UROC1Q96N76 676 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 FAM193BQ96PV7 902 aaPredicted RBP5.36□□□□□ -1.55
VTI1B-202ENST00000553619 BAG1Q99933 345 aaPredicted RBP5.36□□□□□ -1.55
VTI1B-202ENST00000553619 EIF2AQ9BY44 585 aaKnown RBP5.36□□□□□ -1.55
VTI1B-202ENST00000553619 FOXQ1Q9C009 403 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 INTS2Q9H0H0 1204 aaKnown RBP5.36□□□□□ -1.55
VTI1B-202ENST00000553619 DEF6Q9H4E7 631 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 AGO3Q9H9G7 860 aaKnown RBP5.36□□□□□ -1.55
VTI1B-202ENST00000553619 RSAD1Q9HA92 442 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 NLRC4Q9NPP4 1024 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 ABHD10Q9NUJ1 306 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 AIPL1Q9NZN9 384 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 APEX2Q9UBZ4 518 aa5.36□□□□□ -1.55
VTI1B-202ENST00000553619 TPX2Q9ULW0 747 aaKnown RBP5.36□□□□□ -1.55
VTI1B-202ENST00000553619 SMIM28A0A1B0GU29 152 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ABHD14A-ACY1A0A1B0GW23 586 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 SSU72P8A0A1W2PR75 194 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 KIAA0355O15063 1070 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ZSCAN12O43309 604 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 RECQL4O94761 1208 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 GFPT2O94808 682 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 NOL4O94818 638 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 LRIG2O94898 1065 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 CST3P01034 146 aaPredicted RBP5.35□□□□□ -1.55
VTI1B-202ENST00000553619 CXCL10P02778 98 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TUBB4AP04350 444 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 SERPING1P05155 500 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 SKILP12757 684 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TNFAIP3P21580 790 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 AKAP5P24588 427 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ANXA13P27216 316 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 SOX5P35711 763 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 KCNJ6P48051 423 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 FXR1P51114 621 aaKnown RBP eCLIP5.35□□□□□ -1.55
VTI1B-202ENST00000553619 CCL23P55773 120 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 KLHL30Q0D2K2 578 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 LRMPQ12912 555 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 IKZF1Q13422 519 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 RAPGEF1Q13905 1077 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 DRAP1Q14919 205 aaPredicted RBP5.35□□□□□ -1.55
VTI1B-202ENST00000553619 SPA17Q15506 151 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ZBTB6Q15916 424 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ASIC2Q16515 512 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ARHGAP44Q17R89 818 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 NKPD1Q17RQ9 610 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ZNF699Q32M78 642 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ZBTB41Q5SVQ8 909 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 C10orf76Q5T2E6 689 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ZBTB37Q5TC79 503 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TDRD10Q5VZ19 366 aaKnown RBP5.35□□□□□ -1.55
VTI1B-202ENST00000553619 LMBRD2Q68DH5 695 aaPredicted RBP5.35□□□□□ -1.55
VTI1B-202ENST00000553619 MFSD5Q6N075 450 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 PPP1R2P3Q6NXS1 205 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 CNKSR3Q6P9H4 555 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 GLB1LQ6UWU2 654 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 DPH6Q7L8W6 267 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ECHDC2Q86YB7 292 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TMEM192Q8IY95 271 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 PPM1KQ8N3J5 372 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 LRRC52Q8N7C0 313 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TC2NQ8N9U0 490 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TAS1R2Q8TE23 839 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 CCDC42Q96M95 316 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ZNF560Q96MR9 790 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 DNAJC7Q99615 494 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 APOL6Q9BWW8 343 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TTYH3Q9C0H2 523 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 GANQ9H2C0 597 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 TMX1Q9H3N1 280 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 CYP3A43Q9HB55 503 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms