RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PLLPQ9Y342 182 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 RIPK3Q9Y572 518 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 EP400Q96L91 3159 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 SPECC1L-ADORA2AF8WAN1 911 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 TM7SF2O76062 418 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 EDN1P05305 212 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 INHBEP58166 350 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 BIRC2Q13490 618 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 TRPC3Q13507 836 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 KCNJ11Q14654 390 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 NBPF20Q3BBV1 942 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 DNAL1Q4LDG9 190 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 HSPH1Q92598 858 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 CFAP36Q96G28 342 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 TMEM134Q9H6X4 195 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 RSAD1Q9HA92 442 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 DDX43Q9NXZ2 648 aaKnown RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 TAGLN3Q9UI15 199 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 ZBTB12Q9Y330 459 aaPredicted RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 PPME1Q9Y570 386 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 CHADO15335 359 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 FAM155BO75949 473 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 ANPEPP15144 967 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 TNFSF9P41273 254 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 GRM1Q13255 1194 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 SCARA5Q6ZMJ2 495 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 PRPF39Q86UA1 669 aaKnown RBP18.27■□□□□ 0.52
SYNE3-202ENST00000553340 EMC1Q8N766 993 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 FAF2Q96CS3 445 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 ACAP3Q96P50 834 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 MECRQ9BV79 373 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 TJP2Q9UDY2 1190 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 PGAP2Q9UHJ9 254 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 ZNF180Q9UJW8 692 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 DOCK5Q9H7D0 1870 aa18.27■□□□□ 0.52
SYNE3-202ENST00000553340 VWA5AO00534 786 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 AVILO75366 819 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 RNF8O76064 485 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 CD19P15391 556 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 RAB27AP51159 221 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 AP2B1P63010 937 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 KDSRQ06136 332 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 DUOXA2Q1HG44 320 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 SYCP2LQ5T4T6 812 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 ANGEL2Q5VTE6 544 aaKnown RBP18.27■□□□□ 0.51
SYNE3-202ENST00000553340 RIPOR1Q6ZS17 1223 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 FBXO27Q8NI29 283 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 GBP5Q96PP8 586 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 TRIM4Q9C037 500 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 FAM192AQ9GZU8 254 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 LHX5Q9H2C1 402 aa18.27■□□□□ 0.51
SYNE3-202ENST00000553340 RPAP3Q9H6T3 665 aaPredicted RBP18.27■□□□□ 0.51
SYNE3-202ENST00000553340 ATG7O95352 703 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 OATP04181 439 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 POLE2P56282 527 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 ACTR3P61158 418 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 TBCCQ15814 346 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 HSF5Q4G112 596 aaPredicted RBP18.26■□□□□ 0.51
SYNE3-202ENST00000553340 MEX3CQ5U5Q3 659 aaKnown RBP18.26■□□□□ 0.51
SYNE3-202ENST00000553340 FOXB2Q5VYV0 432 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 ULK2Q8IYT8 1036 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 TCHPQ9BT92 498 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 THTPAQ9BU02 230 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 NDE1Q9NXR1 346 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 DNAJB4Q9UDY4 337 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 PLA2G4CQ9UP65 541 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 MED7O43513 233 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 MIPP30301 263 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 DSG1Q02413 1049 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 CDK18Q07002 472 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 TAF5Q15542 800 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 CHI3L2Q15782 390 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 MDH1BQ5I0G3 518 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 MTHFD1LQ6UB35 978 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 MYLK4Q86YV6 388 aaPredicted RBP18.26■□□□□ 0.51
SYNE3-202ENST00000553340 CRLF3Q8IUI8 442 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 NUDCD3Q8IVD9 361 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 APBB2Q92870 758 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 PANX3Q96QZ0 392 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 FRMD8Q9BZ67 464 aaPredicted RBP18.26■□□□□ 0.51
SYNE3-202ENST00000553340 ZNF302Q9NR11 478 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 TTLL3Q9Y4R7 772 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 SIP14410 1827 aa18.26■□□□□ 0.51
SYNE3-202ENST00000553340 AQP5P55064 265 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 NOMO1Q15155 1222 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 ZNF699Q32M78 642 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 IZUMO2Q6UXV1 221 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 ZBTB33Q86T24 672 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 AKT1S1Q96B36 256 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 ATG4CQ96DT6 458 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 SIRPGQ9P1W8 387 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 CYTH4Q9UIA0 394 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 USP18Q9UMW8 372 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 PSME4Q14997 1843 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 AP1G2O75843 785 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 ATP5BP06576 529 aaKnown RBP18.25■□□□□ 0.51
SYNE3-202ENST00000553340 UBTFL6P0CB48 400 aaPredicted RBP18.25■□□□□ 0.51
SYNE3-202ENST00000553340 MRPS5P82675 430 aaKnown RBP18.25■□□□□ 0.51
SYNE3-202ENST00000553340 C1orf146Q5VVC0 180 aa18.25■□□□□ 0.51
SYNE3-202ENST00000553340 NPNTQ6UXI9 565 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms