RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 RAD54BQ9Y620 910 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 STYXL1Q9Y6J8 313 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 A0A087WV48 116 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 GOLGA8CPA6NN73 597 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 DKK1O94907 266 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 FAM13AO94988 1023 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 GRIK1P39086 918 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 PNPLA4P41247 253 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 PDE6CP51160 858 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 NEK4P51957 841 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 ANAPC15P60006 121 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 BNC1Q01954 994 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 SOWAHAQ2M3V2 549 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 C10orf76Q5T2E6 689 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 BAHD1Q8TBE0 780 aaPredicted RBP13.8□□□□□ -0.2
VPS29-211ENST00000553128 KBTBD7Q8WVZ9 684 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 WBP2Q969T9 261 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 TTLL2Q9BWV7 592 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 ZHX3Q9H4I2 956 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 PARVGQ9HBI0 331 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 TMEM30AQ9NV96 361 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 SIX4Q9UIU6 781 aa13.8□□□□□ -0.2
VPS29-211ENST00000553128 FNDC3AQ9Y2H6 1198 aaKnown RBP13.8□□□□□ -0.2
VPS29-211ENST00000553128 VWA3AA6NCI4 1184 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 LAD1O00515 517 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 SLC9A3R1O14745 358 aaPredicted RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 MBL2P11226 248 aaPredicted RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 PLA2G2AP14555 144 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 PFKLP17858 780 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 ITPKBP27987 946 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 NTSR1P30989 418 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 CACNA2D1P54289 1103 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 TMEM25Q86YD3 366 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 SCUBE3Q8IX30 993 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 CSGALNACT2Q8N6G5 542 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 KIAA1958Q8N8K9 716 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 TERB1Q8NA31 727 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 PIP4K2CQ8TBX8 421 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 IPO4Q8TEX9 1081 aaKnown RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 POMGNT1Q8WZA1 660 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 SLC39A7Q92504 469 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 ZFRQ96KR1 1074 aaKnown RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 DCBLD2Q96PD2 775 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 UBL7Q96S82 380 aaPredicted RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 SYT15Q9BQS2 421 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 TRIM9Q9C026 710 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 FAM124BQ9H5Z6 455 aaPredicted RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 PRDM16Q9HAZ2 1276 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 BLOC1S4Q9NUP1 217 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 GDAP2Q9NXN4 497 aa13.79□□□□□ -0.2
VPS29-211ENST00000553128 MAGEC2Q9UBF1 373 aaPredicted RBP13.79□□□□□ -0.2
VPS29-211ENST00000553128 F8VP50 259 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 CILPO75339 1184 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 ZNF217O75362 1048 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 IL18RAPO95256 599 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 PCSK1P29120 753 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 LHX1P48742 406 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 CYP27A1Q02318 531 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 GAD2Q05329 585 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 KCNA1Q09470 495 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 TAF10Q12962 218 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 MCM6Q14566 821 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 SLFN12LQ6IEE8 588 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 C4orf50Q6ZRC1 276 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 TRMT11Q7Z4G4 463 aaKnown RBP13.78□□□□□ -0.2
VPS29-211ENST00000553128 BBS7Q8IWZ6 715 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 ZCCHC9Q8N567 271 aaKnown RBP13.78□□□□□ -0.2
VPS29-211ENST00000553128 TOP6BLQ8N6T0 577 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 LRRC52Q8N7C0 313 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 SAAL1Q96ER3 474 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 CDK5RAP3Q96JB5 506 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 MRGPRX1Q96LB2 322 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 FAM213AQ9BRX8 229 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 GAREM1Q9H706 876 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 DEC1Q9P2X7 70 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 SUSD2Q9UGT4 822 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 BTBD3Q9Y2F9 522 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 NME7Q9Y5B8 376 aa13.78□□□□□ -0.2
VPS29-211ENST00000553128 WASH3PC4AMC7 463 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 PRRT4C9JH25 899 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 HOXC11O43248 304 aaPredicted RBP13.77□□□□□ -0.21
VPS29-211ENST00000553128 NDUFS2O75306 463 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 KRT19P08727 400 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 PDGFRBP09619 1106 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 GNSP15586 552 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 POU5F1Q01860 360 aaKnown RBP13.77□□□□□ -0.21
VPS29-211ENST00000553128 IFRD2Q12894 506 aaPredicted RBP13.77□□□□□ -0.21
VPS29-211ENST00000553128 ANO4Q32M45 955 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 SYCP2LQ5T4T6 812 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 VSTM1Q6UX27 236 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 LIMS2Q7Z4I7 341 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 NT5DC4Q86YG4 428 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 CHPFQ8IZ52 775 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 KCNV2Q8TDN2 545 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 PCED1BQ96HM7 432 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 TM7SF3Q9NS93 570 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 TBC1D14Q9P2M4 693 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 STARD13Q9Y3M8 1113 aa13.77□□□□□ -0.21
VPS29-211ENST00000553128 ATMQ13315 3056 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms